Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.0e-205 717.2 351 100.0
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.9e-130 469.2 305 79.0
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 2.9e-130 469.2 327 74.0
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.9e-129 466.5 327 73.4
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 2.9e-106 389.4 348 61.8
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 2.4e-100 369.8 306 62.4
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.7e-98 363.6 308 62.3
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.7e-96 356.3 313 59.7
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 4.6e-96 355.5 313 61.0
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.0e-95 354.4 308 60.1
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.1e-95 352.1 265 68.3
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.6e-94 347.8 265 66.0
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.1e-93 346.7 352 54.3
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.8e-93 346.3 261 66.7
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 1.1e-92 344.4 337 55.8
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.2e-91 340.9 304 57.9
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 2.0e-91 340.1 232 74.1
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 7.6e-91 338.2 307 57.7
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.3e-90 337.4 301 59.8
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 2.9e-90 336.3 297 57.6
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 2.9e-90 336.3 297 57.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.4e-89 333.2 307 57.7
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.2e-89 332.8 294 59.5
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 4.2e-89 332.4 279 62.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 4.2e-89 332.4 260 65.8
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.4e-89 332.0 291 60.5
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 5.4e-89 332.0 301 59.1
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 7.1e-89 331.6 301 57.5
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 9.3e-89 331.3 262 65.6
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 9.3e-89 331.3 307 57.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.2e-88 330.9 301 58.8
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.6e-88 330.5 307 55.4
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 2.1e-88 330.1 307 56.4
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 4.6e-88 328.9 307 56.4
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.8e-87 327.0 317 56.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.3e-87 326.6 307 56.7
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 3.0e-87 326.2 279 59.1
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.7e-87 325.1 301 57.1
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 8.7e-87 324.7 298 57.0
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.5e-86 323.9 198 81.8
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.5e-86 323.9 306 56.5
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 2.5e-86 323.2 277 59.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-86 322.8 307 55.4
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 5.6e-86 322.0 304 55.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 5.6e-86 322.0 299 56.9
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.4e-86 321.6 307 55.4
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.3e-85 320.9 309 55.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.3e-85 320.9 307 54.1
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 2.8e-85 319.7 307 54.1
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.8e-85 319.7 309 54.4
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 3.7e-85 319.3 301 57.1
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 4.8e-85 318.9 312 54.5
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 6.2e-85 318.5 307 54.7
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 6.2e-85 318.5 307 54.4
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.8e-84 317.0 307 53.7
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 3.1e-84 316.2 278 59.0
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.2e-83 314.3 289 57.1
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 2.6e-83 313.2 282 57.4
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 5.8e-83 312.0 281 58.7
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.0e-82 311.2 296 55.7
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 2.9e-82 309.7 309 53.4
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 4.9e-82 308.9 284 57.0
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 4.9e-82 308.9 297 54.5
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 9.3e-81 304.7 289 56.7
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.6e-80 303.9 313 51.8
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.6e-80 303.9 239 62.8
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 2.7e-80 303.1 247 60.7
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 7.4e-78 295.0 275 56.7
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 9.6e-78 294.7 295 53.6
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 9.6e-78 294.7 250 60.8
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 6.2e-77 292.0 259 57.1
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.4e-76 290.8 301 51.5
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 4.1e-76 289.3 296 52.7
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 5.3e-76 288.9 261 54.4
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.5e-73 280.0 293 52.9
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.2e-73 279.6 303 50.2
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 7.1e-73 278.5 283 52.3
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 7.1e-73 278.5 259 54.1
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 3.5e-72 276.2 270 53.3
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 6.1e-72 275.4 316 50.0
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.9e-71 272.7 249 56.6
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 6.7e-71 271.9 217 64.5
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.5e-70 270.8 251 59.0
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.5e-70 270.8 258 57.0
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 3.3e-70 269.6 246 60.2
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 2.2e-69 266.9 221 62.9
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 4.8e-69 265.8 281 53.7
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.6e-64 250.8 271 52.0
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 1.5e-62 244.2 397 40.6
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 4.1e-60 236.1 288 46.9
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 2.7e-56 223.4 221 51.6
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 2.0e-54 217.2 243 50.2
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.3e-53 214.5 265 47.5
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 2.5e-49 200.3 225 51.6
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 1.0e-47 194.9 160 61.2
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.0e-47 194.9 266 41.4
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 5.2e-47 192.6 280 45.0
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.1e-46 191.4 156 62.2
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.2e-45 187.2 246 39.4
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 4.5e-43 179.5 198 50.5
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.0e-42 178.3 251 40.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.5e-41 173.7 293 41.0
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 4.0e-39 166.4 200 47.0
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.0e-38 164.1 272 36.4
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.5e-35 152.9 188 46.8
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.0e-30 137.5 75 81.3
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 9.8e-30 135.2 159 45.9
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.6e-27 127.9 308 32.8
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 5.0e-26 122.9 68 77.9
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.4e-20 104.8 58 82.8
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.4e-20 104.8 248 29.4
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 9.8e-14 82.0 153 39.9
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 8.3e-13 79.0 85 45.9
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 7.8e-11 72.4 52 61.5
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-09 67.8 49 67.3
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.7 34 82.4
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 4.0e-07 60.1 64 46.9
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 5.2e-07 59.7 29 82.8
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 2.0e-06 57.8 67 49.3
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.6e-06 57.4 30 76.7
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 5.8e-06 56.2 44 56.8
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 5.8e-06 56.2 44 56.8
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 5.8e-06 56.2 69 42.0
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 9.8e-06 55.5 61 44.3
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 9.8e-06 55.5 61 44.3


User provided reference genes

Program Settings