Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 8.6e-183 643.7 357 100.0
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.2e-165 586.6 352 93.2
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.4e-129 466.8 369 78.0
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 9.3e-129 464.2 369 77.2
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 4.5e-115 418.7 367 68.9
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 6.1e-112 408.3 321 72.3
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 8.8e-111 404.4 358 67.6
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.2e-106 389.8 364 65.9
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.5e-106 388.3 367 66.8
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.6e-96 357.1 362 61.3
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 7.7e-91 338.2 355 58.0
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.9e-89 333.6 340 60.9
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 3.6e-88 329.3 362 58.6
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.2e-87 325.5 363 57.9
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.2e-86 324.3 360 56.9
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.8e-84 317.0 354 55.1
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.6e-82 308.5 360 54.7
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.1e-80 303.5 356 55.3
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.8e-80 303.1 344 54.9
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.4e-79 300.8 375 51.2
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.8e-79 300.4 360 53.1
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.3e-79 300.1 362 53.6
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.0e-78 297.0 333 57.4
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 9.8e-78 294.7 357 53.2
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.9e-77 293.1 356 52.5
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.9e-77 292.4 351 52.7
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.1e-76 291.2 358 51.7
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.4e-76 290.8 336 54.5
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.4e-76 290.8 358 53.9
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.4e-76 290.8 359 53.8
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.2e-76 289.7 362 52.5
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 7.0e-76 288.5 366 52.7
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.7e-75 286.6 331 55.0
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.6e-75 285.8 356 52.5
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 6.6e-74 282.0 358 53.1
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.1e-73 281.2 369 52.6
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.9e-73 280.4 362 52.5
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 9.5e-73 278.1 359 52.9
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 8.0e-72 275.0 358 53.9
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 6.8e-71 271.9 358 50.6
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 6.8e-71 271.9 356 52.2
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 8.9e-71 271.6 358 49.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.2e-70 271.2 303 54.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.2e-70 271.2 359 51.8
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 5.8e-70 268.9 360 50.6
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.2e-69 266.9 346 51.2
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.9e-69 266.5 356 48.6
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 8.3e-69 265.0 367 49.3
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 5.4e-68 262.3 363 52.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 5.4e-68 262.3 353 50.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 9.2e-68 261.5 353 50.1
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.3e-66 256.9 360 49.7
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.1e-65 254.6 359 48.2
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 4.3e-65 252.7 362 50.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 7.3e-65 251.9 358 48.0
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.2e-64 251.1 341 49.9
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.6e-64 250.8 364 48.6
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.7e-64 249.2 371 48.5
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 8.1e-64 248.4 366 47.5
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 3.1e-63 246.5 344 49.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 3.1e-63 246.5 359 47.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 3.1e-63 246.5 363 47.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.0e-63 246.1 359 48.5
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.2e-62 244.6 329 51.1
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.2e-62 244.6 354 46.3
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 7.5e-62 241.9 333 48.6
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.7e-61 239.6 365 46.3
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.7e-61 239.6 342 47.7
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 8.3e-61 238.4 352 47.4
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 8.3e-61 238.4 361 46.3
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.1e-60 238.0 358 46.6
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.4e-60 237.7 345 47.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 7.1e-60 235.3 365 47.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-59 234.6 363 46.8
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 4.6e-59 232.6 364 49.2
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 7.8e-59 231.9 350 48.0
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.5e-57 227.6 335 47.2
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 5.6e-57 225.7 362 45.9
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 9.5e-57 224.9 357 44.5
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 4.7e-56 222.6 361 46.8
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.1e-55 221.5 317 48.9
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.4e-55 221.1 370 45.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.4e-55 221.1 320 51.6
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 8.9e-55 218.4 374 45.5
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.9e-55 218.4 360 45.3
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.2e-54 218.0 397 43.1
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.5e-54 217.6 367 46.6
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 3.4e-54 216.5 357 44.3
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 9.9e-54 214.9 355 42.5
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 4.9e-53 212.6 361 45.4
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.4e-52 211.1 359 46.2
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 2.4e-52 210.3 343 45.2
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 5.4e-52 209.1 360 46.1
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 5.4e-52 209.1 363 46.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 7.1e-52 208.8 361 44.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.6e-51 206.1 327 43.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.3e-50 204.5 384 42.2
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.7e-50 204.1 373 44.0
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.3e-49 199.9 361 46.0
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 4.3e-49 199.5 359 44.6
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 4.3e-49 199.5 280 47.1
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 5.6e-49 199.1 364 45.6
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 7.3e-49 198.7 364 46.2
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.2e-48 198.0 334 46.1
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 2.8e-48 196.8 286 46.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 8.1e-48 195.3 364 42.3
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.1e-47 194.9 359 43.5
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.5e-46 191.0 372 42.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.5e-46 191.0 343 43.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.0e-46 190.7 340 45.3
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 3.4e-46 189.9 390 41.0
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 9.9e-46 188.3 285 48.1
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.4e-44 184.5 396 40.7
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.2e-43 181.4 414 38.4
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.6e-43 181.0 350 41.7
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.3e-42 177.9 343 40.5
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.6e-40 171.0 290 42.8
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.6e-40 171.0 348 40.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 8.1e-40 168.7 348 40.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.3e-37 161.4 358 36.9
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 3.8e-37 159.8 293 41.3
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.7e-35 153.7 316 39.6
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 3.5e-35 153.3 292 41.4
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.0e-34 151.8 292 41.4
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 8.7e-34 148.7 374 34.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.1e-33 148.3 334 36.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 5.6e-33 146.0 244 42.2
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 5.6e-33 146.0 292 40.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 5.6e-33 146.0 292 40.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 5.6e-33 146.0 292 40.8
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 4.8e-32 142.9 334 36.2
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.4e-28 131.3 181 51.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.1e-23 115.2 435 31.3
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.9e-12 77.8 96 42.7
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 3.6e-11 73.6 113 39.8
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 7.9e-11 72.4 91 41.8
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.3e-10 71.6 106 37.7
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.3e-10 71.6 194 30.9
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.3e-10 71.6 114 38.6
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.8e-10 71.2 136 33.8
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.3e-10 70.9 136 33.8
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 3.0e-10 70.5 213 31.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 5.1e-10 69.7 177 31.1
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 6.7e-10 69.3 112 38.4
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 8.8e-10 68.9 160 31.9
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 8.8e-10 68.9 157 33.8
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.1e-09 68.6 172 30.8
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.9e-09 67.8 188 31.9
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 5.7e-09 66.2 109 37.6
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 5.7e-09 66.2 134 30.6
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 7.4e-09 65.9 151 32.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 7.4e-09 65.9 167 28.7
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 7.4e-09 65.9 187 34.2
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 9.7e-09 65.5 189 29.6
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 9.7e-09 65.5 175 34.3
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.8e-08 63.9 56 50.0
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.7e-08 63.5 90 41.1
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 4.8e-08 63.2 195 29.2
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 4.8e-08 63.2 207 27.5
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 6.3e-08 62.8 154 33.8
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 6.3e-08 62.8 109 32.1
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 6.3e-08 62.8 149 30.2
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.4e-07 61.6 195 29.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.4e-07 61.6 197 31.5
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.4e-07 60.8 138 32.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 6.9e-07 59.3 144 30.6
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 9.1e-07 58.9 230 28.3
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 2.6e-06 57.4 140 33.6
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 5.9e-06 56.2 189 31.2


User provided reference genes

Program Settings