Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.7e-205 718.4 356 100.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.7e-192 675.2 355 94.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.3e-162 576.6 357 84.3
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.9e-161 572.8 355 81.7
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 5.4e-161 571.2 355 82.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.3e-154 550.1 356 78.9
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.3e-154 550.1 356 79.2
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.1e-153 547.0 356 78.7
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.2e-153 545.4 356 78.1
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.8e-152 540.8 355 79.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 9.6e-150 533.9 383 73.9
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.1e-140 502.3 354 70.1
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.9e-134 483.0 355 69.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.8e-132 476.5 354 66.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.1e-132 475.7 354 66.1
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 5.3e-132 474.9 354 68.6
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 3.8e-130 468.8 354 66.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.2e-128 463.8 354 65.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 6.0e-128 461.5 354 67.2
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.0e-127 460.7 354 65.8
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.9e-127 458.8 356 64.3
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.9e-127 458.8 356 64.3
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.1e-127 458.4 354 66.7
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 6.7e-127 458.0 354 64.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.1e-126 457.2 355 65.4
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.9e-126 456.4 356 64.0
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.5e-126 456.1 354 64.7
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 6.2e-125 451.4 356 64.9
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 8.2e-125 451.1 354 65.5
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 8.2e-125 451.1 354 63.6
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.4e-124 450.3 354 64.4
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.1e-124 449.1 410 58.8
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.9e-124 448.0 354 62.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.9e-124 448.0 354 62.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 1.2e-123 447.2 354 63.8
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.0e-123 446.4 353 63.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.2e-122 443.0 354 63.0
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.2e-122 443.0 354 63.8
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.9e-122 442.6 354 63.6
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.0e-122 441.8 354 61.9
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 6.5e-122 441.4 354 65.0
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.1e-121 440.7 354 63.0
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.4e-121 440.3 354 62.7
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 4.2e-121 438.7 354 61.6
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 5.5e-121 438.3 354 63.0
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 5.5e-121 438.3 354 62.7
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 7.2e-121 438.0 354 63.0
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 7.2e-121 438.0 354 63.0
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 7.2e-121 438.0 355 63.9
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 7.2e-121 438.0 354 61.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.2e-120 437.2 354 62.7
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 4.6e-120 435.3 354 62.1
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.0e-119 434.1 354 62.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.8e-119 433.3 354 61.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.3e-119 433.0 354 61.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.3e-119 433.0 354 61.3
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.1e-118 430.6 354 61.6
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-118 429.9 354 61.3
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 3.3e-118 429.1 354 62.1
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 3.3e-118 429.1 354 61.0
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 9.7e-118 427.6 354 60.5
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 9.7e-118 427.6 354 61.6
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.6e-117 426.8 354 63.3
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.6e-117 426.8 356 62.1
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 4.8e-117 425.2 354 61.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 6.3e-117 424.9 354 59.6
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 6.3e-117 424.9 354 61.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 8.2e-117 424.5 354 61.9
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.4e-116 423.7 354 59.6
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.4e-116 423.7 354 61.0
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.8e-116 423.3 354 59.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.4e-116 422.9 354 59.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 4.1e-116 422.2 352 61.4
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 5.3e-116 421.8 354 59.6
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 6.9e-116 421.4 354 59.3
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 6.9e-116 421.4 354 59.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.5e-115 420.2 353 59.8
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.6e-115 419.5 354 59.0
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.6e-115 419.5 354 60.5
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.9e-115 418.3 354 60.7
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.3e-114 417.2 352 60.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.7e-114 416.8 354 58.5
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.5e-114 414.8 353 61.5
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.1e-113 414.1 354 59.3
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 4.2e-113 412.1 354 58.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.2e-113 412.1 354 58.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 9.4e-113 411.0 351 60.7
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 3.0e-111 406.0 318 65.1
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 2.0e-110 403.3 354 56.8
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.7e-110 401.7 354 60.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.2e-107 394.0 329 61.4
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-107 394.0 354 58.2
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.5e-107 393.7 354 58.2
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.5e-107 393.7 354 58.2
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.7e-106 390.2 355 56.3
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.2e-106 389.8 353 56.1
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 5.0e-106 388.7 354 56.8
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.4e-105 387.1 354 57.1
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 7.2e-105 384.8 354 54.5
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 9.4e-105 384.4 257 76.3
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.6e-104 383.6 311 62.1
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.0e-103 380.9 356 55.6
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.0e-103 380.9 355 56.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-103 380.9 356 57.0
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 7.4e-102 374.8 257 72.4
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 8.2e-101 371.3 257 71.6
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.4e-100 370.5 354 56.8
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.7e-98 363.6 256 71.1
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 9.1e-92 341.3 274 61.7
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.9e-90 336.3 245 67.8
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 5.0e-90 335.5 263 64.3
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.6e-88 330.5 321 51.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.8e-84 317.0 354 50.0
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.5e-82 308.5 354 50.0
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.9e-81 307.0 356 45.8
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 3.2e-81 306.2 353 45.6
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 4.7e-80 302.4 353 44.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 6.8e-79 298.5 353 43.3
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 2.7e-75 286.6 353 45.9
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 4.5e-75 285.8 353 44.5
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.0e-71 274.6 345 46.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.3e-66 257.7 353 43.3
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.5e-65 254.2 228 58.3
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 5.8e-54 215.7 187 57.2
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 7.8e-51 205.3 351 35.6
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.6e-41 172.6 170 52.4
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.6e-38 162.2 235 43.4
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.9e-36 157.5 374 29.4
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.7e-27 127.1 86 69.8
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.0e-27 125.9 86 68.6
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.9e-27 125.6 175 42.9
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.1e-25 121.7 373 29.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.8e-24 117.1 90 67.8
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-22 110.5 83 61.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.7e-21 107.8 170 38.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 4.6e-19 99.8 110 50.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.0e-18 98.6 125 45.6
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 4.8e-16 89.7 74 62.2
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.9e-15 85.9 62 67.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 4.2e-12 76.6 45 80.0
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-11 75.1 47 72.3
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.6e-11 74.7 347 19.9
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.7e-11 73.9 45 73.3
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-07 62.0 74 50.0
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.3e-07 59.7 37 73.0
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.9e-07 59.3 37 73.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-07 58.9 37 70.3
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.0e-07 58.9 37 70.3
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.5e-06 58.2 37 70.3
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.5e-06 58.2 37 70.3
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.5e-06 58.2 37 70.3
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.6e-06 57.4 37 70.3
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.4e-06 57.0 100 38.0
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-06 56.6 36 69.4
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.5e-06 56.6 37 70.3
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.9e-06 56.2 37 67.6
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 5.9e-06 56.2 37 70.3
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-05 55.5 35 68.6
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-05 55.5 35 68.6


User provided reference genes

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