Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 0.0e+00 1321.6 739 100.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1132.9 741 85.2
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1104.7 740 84.7
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1101.3 741 85.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1101.3 740 84.2
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 0.0e+00 1085.5 619 97.1
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 0.0e+00 1081.6 616 97.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 7.7e-295 1016.9 748 75.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.0e-291 1006.5 739 74.2
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.9e-289 997.7 745 74.9
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 3.1e-283 978.4 745 71.9
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 6.4e-281 970.7 743 70.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 4.1e-280 968.0 741 71.3
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.3e-278 962.2 744 72.2
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.2e-274 949.9 755 70.9
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.0e-274 949.1 744 70.4
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 2.6e-274 948.7 740 70.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 8.3e-273 943.7 749 72.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 1.4e-272 943.0 745 68.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 7.0e-272 940.6 775 68.1
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.2e-271 939.9 742 69.5
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 6.6e-270 934.1 751 71.5
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 1.1e-269 933.3 744 69.1
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 3.3e-269 931.8 743 67.7
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.6e-268 929.5 733 67.1
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 3.6e-268 928.3 733 69.0
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 8.1e-268 927.2 756 66.4
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.3e-267 925.6 747 68.8
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 3.1e-267 925.2 742 69.5
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 4.0e-267 924.9 744 69.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.5e-266 922.9 743 68.6
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 2.6e-266 922.2 755 67.7
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.4e-266 921.8 755 70.7
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 4.4e-266 921.4 746 65.3
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 1.7e-265 919.5 744 66.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 3.2e-264 915.2 744 66.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 5.4e-264 914.4 743 68.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 2.3e-262 909.1 742 68.6
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.6e-262 907.5 750 67.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.3e-261 905.2 742 65.1
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.2e-260 903.3 749 67.0
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 3.6e-260 901.7 744 66.0
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.7e-260 901.4 742 65.6
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 6.2e-260 901.0 751 67.0
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 8.1e-260 900.6 729 68.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 1.1e-259 900.2 742 65.5
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 3.1e-259 898.7 748 69.3
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 3.1e-259 898.7 742 65.8
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.2e-259 897.9 756 66.1
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 8.9e-259 897.1 747 65.6
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 1.2e-258 896.7 743 64.6
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.6e-258 895.6 744 66.7
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 3.4e-258 895.2 745 64.8
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.4e-258 894.8 742 65.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 9.9e-258 893.6 759 66.3
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.3e-257 893.3 746 64.6
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 6.4e-257 891.0 743 68.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.2e-255 886.7 765 62.9
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.6e-255 886.3 764 62.8
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 2.1e-255 885.9 719 68.2
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 2.7e-255 885.6 753 68.3
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.0e-254 883.6 732 67.9
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.3e-254 883.2 722 68.1
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-254 883.2 748 68.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.3e-254 883.2 719 65.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-254 882.1 788 64.1
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 4.8e-252 874.8 740 65.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 8.1e-252 874.0 743 66.1
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.4e-251 873.2 698 66.5
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 3.1e-251 872.1 663 68.8
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 9.0e-251 870.5 731 64.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 5.8e-250 867.8 742 61.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 7.6e-250 867.5 733 66.0
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.8e-249 865.1 708 63.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.8e-249 865.1 778 63.1
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.1e-248 863.6 742 62.9
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 1.6e-247 859.8 751 65.6
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 4.6e-247 858.2 658 68.5
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 7.8e-247 857.4 749 62.5
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 5.1e-246 854.7 742 61.9
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 8.7e-246 854.0 763 62.0
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 1.9e-245 852.8 742 60.9
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 7.3e-245 850.9 742 61.2
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.3e-244 850.1 742 60.6
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.6e-244 849.7 742 60.2
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.6e-244 849.7 742 61.1
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 2.1e-244 849.4 752 65.3
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.1e-244 849.4 742 60.9
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.8e-244 849.0 765 63.1
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.1e-243 847.0 810 61.1
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.1e-243 847.0 742 60.1
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 3.1e-243 845.5 742 60.6
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 6.9e-243 844.3 733 60.6
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 1.5e-242 843.2 733 60.4
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.5e-237 826.6 667 65.1
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 5.6e-237 824.7 663 65.3
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 7.4e-237 824.3 663 65.5
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 3.1e-235 818.9 789 57.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 7.6e-234 814.3 665 64.7
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 8.4e-233 810.8 731 62.2
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.1e-232 810.4 745 62.4
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.2e-231 807.0 749 60.5
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 4.3e-229 798.5 778 56.3
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.6e-228 796.6 743 58.3
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 4.5e-226 788.5 745 59.9
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.5e-223 778.9 541 78.6
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 6.7e-222 774.6 745 58.9
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 9.0e-219 764.2 633 69.0
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.3e-209 733.8 572 66.4
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.9e-207 724.5 547 72.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 4.8e-204 715.3 505 78.8
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 6.3e-204 714.9 508 76.6
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.8e-203 713.4 563 63.8
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.1e-200 704.1 514 72.0
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.5e-200 703.7 692 54.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.2e-190 668.7 505 72.7
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.4e-189 665.6 684 50.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 9.8e-189 664.5 685 52.0
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 4.1e-187 659.1 714 50.8
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.1e-184 651.0 671 53.1
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 3.1e-166 589.7 694 49.3
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 9.2e-155 551.6 517 56.3
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.4e-125 453.4 406 57.4
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.7e-119 433.3 346 66.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-113 415.2 480 54.6
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 7.2e-107 392.5 566 48.4
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.7e-104 382.9 367 57.8
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 7.4e-104 382.5 367 54.2
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.6e-101 374.0 407 48.6
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 6.5e-100 369.4 295 67.5
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.5e-99 366.3 414 47.8
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 7.9e-98 362.5 311 64.3
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.2e-92 344.4 620 37.3
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 3.2e-91 340.5 265 66.0
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 9.4e-91 339.0 402 53.0
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.4e-81 308.5 573 32.6
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 5.3e-78 296.6 689 31.1
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 9.8e-72 275.8 189 78.3
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.3e-71 275.4 426 43.9
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.7e-71 275.0 511 38.4
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-70 271.9 221 63.3
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.5e-69 267.3 581 34.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 8.0e-66 256.1 219 56.2
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 3.7e-63 247.3 244 52.5
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 7.0e-62 243.0 267 56.2
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.7e-60 238.4 325 43.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.0e-57 229.2 207 63.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 9.2e-54 216.1 742 29.6
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.6e-53 215.3 295 46.1
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 4.7e-50 203.8 136 75.0
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 6.0e-45 186.8 243 46.1
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 7.8e-45 186.4 242 48.3
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.3e-43 180.6 183 60.1
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.2e-38 164.5 124 79.0
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.3e-28 132.5 131 55.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 5.6e-27 127.1 159 46.5
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.2e-26 125.9 304 34.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-25 122.5 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-25 122.5 74 75.7
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 6.9e-25 120.2 122 54.9
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.4e-24 117.9 101 61.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.3e-23 115.9 288 33.7
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 4.6e-21 107.5 104 59.6
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 7.8e-21 106.7 170 41.2
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 8.7e-20 103.2 76 67.1
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.5e-19 101.7 66 75.8
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.2e-16 92.8 115 47.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.9e-14 85.5 294 30.3
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 2.4e-14 85.1 124 40.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.8e-10 71.6 53 67.9
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.6e-10 71.2 163 37.4
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 9.3e-06 56.6 284 26.1


User provided reference genes

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