Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 0.0e+00 1193.3 618 100.0
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.3e-292 1008.4 630 86.3
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.7e-256 887.1 734 69.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.5e-206 723.4 768 58.1
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.4e-196 690.3 740 59.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 9.0e-196 687.6 748 58.6
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 3.2e-153 546.2 752 49.3
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 6.4e-109 399.1 351 67.5
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.4e-100 371.3 729 38.7
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 5.3e-87 326.2 755 33.8
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.8e-74 284.6 767 33.4
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.2e-68 263.8 766 31.7
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.1e-66 256.5 779 30.9
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.0e-61 242.3 733 31.9
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.3e-57 227.3 263 52.1
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.3e-56 225.3 762 29.9
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.7e-53 214.9 304 45.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 8.5e-53 212.6 767 29.2
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.9e-52 211.5 687 31.0
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.5e-52 211.1 778 28.5
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 5.5e-52 209.9 725 29.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 7.2e-52 209.5 862 27.8
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 6.1e-51 206.5 255 50.2
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.8e-50 204.9 269 48.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.6e-46 191.0 264 47.3
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.5e-46 190.7 262 47.7
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 7.7e-46 189.5 744 29.8
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 2.2e-45 188.0 633 28.4
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 3.8e-45 187.2 610 29.8
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.5e-45 186.0 268 44.0
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 8.5e-45 186.0 254 47.2
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.5e-44 185.3 651 30.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.5e-44 185.3 258 46.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.5e-44 185.3 259 45.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 3.2e-44 184.1 159 64.2
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 4.2e-44 183.7 384 38.5
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.5e-44 183.3 367 37.9
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 5.5e-44 183.3 243 48.1
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.2e-44 183.0 688 30.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.1e-43 181.4 265 44.5
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 3.6e-43 180.6 260 43.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.6e-43 180.6 195 53.3
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 6.1e-43 179.9 146 64.4
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 6.1e-43 179.9 210 48.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.8e-42 178.3 255 45.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.3e-40 172.2 276 41.3
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.7e-40 171.8 596 29.9
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-39 169.1 210 47.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 9.1e-39 166.0 258 41.9
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 1.6e-38 165.2 252 42.5
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.5e-38 163.7 267 43.4
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 4.5e-38 163.7 242 43.8
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.8e-37 160.6 209 45.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 5.0e-37 160.2 260 38.1
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 6.5e-37 159.8 239 42.7
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.5e-36 158.7 743 29.2
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.9e-36 158.3 275 41.1
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.5e-36 157.9 278 39.6
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.2e-36 157.1 282 40.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 7.2e-36 156.4 253 43.5
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 3.6e-35 154.1 263 41.8
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.6e-35 154.1 259 43.6
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 6.1e-35 153.3 678 27.1
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.1e-35 153.3 231 44.2
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 5.2e-34 150.2 703 26.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.2e-33 149.1 276 39.1
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.5e-33 148.7 255 40.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 3.4e-33 147.5 279 40.9
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 5.7e-33 146.7 715 27.1
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 5.7e-33 146.7 199 45.2
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 9.8e-33 146.0 297 37.7
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.3e-32 145.6 270 40.4
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.8e-32 144.4 720 28.1
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.8e-32 143.7 463 31.5
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 4.8e-32 143.7 205 43.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 6.3e-32 143.3 269 41.3
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 8.3e-32 142.9 653 28.3
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.0e-31 139.8 249 37.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-30 139.0 249 38.2
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.2e-30 139.0 175 47.4
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-30 138.7 261 37.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 3.5e-30 137.5 736 28.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 3.5e-30 137.5 745 24.6
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.9e-30 136.7 267 38.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.9e-30 136.7 241 38.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.7e-29 135.2 268 38.1
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.1e-28 132.5 258 36.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.5e-28 132.1 273 38.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.5e-28 132.1 753 23.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.7e-27 127.9 115 53.9
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.4e-26 125.6 281 34.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 6.8e-26 123.2 203 41.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 6.8e-26 123.2 203 41.4
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 8.8e-26 122.9 266 36.8
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.6e-25 121.3 277 35.0
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 5.7e-25 120.2 283 34.6
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 5.7e-25 120.2 283 34.6
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 5.7e-25 120.2 657 26.9
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 7.5e-25 119.8 364 31.9
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 9.8e-25 119.4 226 35.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.3e-24 119.0 278 34.2
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.7e-24 118.6 175 38.9
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.2e-24 118.2 177 41.2
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.2e-24 118.2 634 24.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.8e-24 117.9 281 33.5
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 4.9e-24 117.1 650 24.6
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 8.3e-24 116.3 276 33.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 8.3e-24 116.3 662 26.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.1e-23 115.9 628 25.8
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.4e-23 114.8 628 27.1
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.4e-23 114.8 468 28.8
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 3.1e-23 114.4 162 46.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.0e-22 111.7 662 25.2
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 3.5e-22 110.9 671 26.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.5e-22 110.5 260 33.8
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.0e-21 109.4 277 34.3
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-21 109.0 266 31.2
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.3e-21 108.2 185 35.1
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.8e-21 107.5 642 24.6
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.1e-20 105.9 171 39.8
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.2e-20 103.2 266 31.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 7.2e-20 103.2 230 34.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-19 102.4 265 30.9
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-19 102.1 116 46.6
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 4.7e-19 100.5 274 31.8
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 8.0e-19 99.8 268 31.3
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 8.0e-19 99.8 272 32.4
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 8.0e-19 99.8 633 25.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.5e-17 93.2 157 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.5e-17 93.2 157 37.6
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.8e-17 92.8 61 68.9
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.8e-17 92.8 110 46.4
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.7e-16 92.0 600 27.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-16 91.7 186 34.9
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 3.7e-16 90.9 144 41.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 6.3e-16 90.1 112 44.6
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 6.3e-16 90.1 261 29.1
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.3e-16 89.7 175 33.7
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 8.3e-16 89.7 202 36.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.8e-15 88.6 144 35.4
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.6e-14 85.5 394 26.9
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.0e-14 85.1 112 37.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.8e-14 83.2 226 31.4
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 3.9e-13 80.9 93 41.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-12 78.6 131 38.2
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 7.3e-12 76.6 126 35.7
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.3e-12 76.6 59 62.7
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 5.2e-10 70.5 70 54.3
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.2e-09 69.3 93 47.3
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 9.8e-09 66.2 55 56.4
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.4e-07 61.6 433 24.0
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 4.1e-07 60.8 113 36.3
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 2.0e-06 58.5 129 31.8
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 2.7e-06 58.2 103 37.9
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.6e-06 57.4 243 25.5


User provided reference genes

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