Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004897g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.1e-121 439.9 207 100.0
Nitab4.5_0001024g0020 Nicotiana tabacum HOM05D002103 ORTHO05D004020 3.9e-111 404.8 196 95.4
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 7.4e-110 400.6 198 92.9
Sopen07g013400 Solanum pennellii HOM05D002103 ORTHO05D004020 2.2e-106 389.0 198 89.9
PGSC0003DMG400041182 Solanum tuberosum HOM05D002103 ORTHO05D004020 3.8e-106 388.3 200 89.0
Nitab4.5_0000686g0060 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.0e-95 353.6 201 79.1
PGSC0003DMG400007986 Solanum tuberosum HOM05D002103 ORTHO05D004020 5.7e-94 347.8 198 79.3
Sopen04g032770 Solanum pennellii HOM05D002103 ORTHO05D004020 9.7e-94 347.1 201 78.1
Nitab4.5_0001101g0080 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.3e-93 346.7 199 77.9
Solyc04g079160.4 Solanum lycopersicum HOM05D002103 ORTHO05D004020 2.8e-93 345.5 201 77.1
CAN.G371.35 Capsicum annuum HOM05D002103 ORTHO05D004020 1.5e-91 339.7 198 76.8
Oeu009550.1 Olea europaea HOM05D002103 ORTHO05D004020 6.5e-90 334.3 198 74.2
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 6.5e-90 334.3 201 74.6
ECA246G3192 Erigeron canadensis HOM05D002103 ORTHO05D004020 3.6e-88 328.6 198 73.7
MSTRG.24326 Avicennia marina HOM05D002103 ORTHO05D004020 1.5e-86 323.2 198 70.7
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 1.5e-86 323.2 198 73.7
HanXRQChr02g0037661 Helianthus annuus HOM05D002103 ORTHO05D004020 1.9e-86 322.8 196 73.0
ECA247G1496 Erigeron canadensis HOM05D002103 ORTHO05D004020 1.3e-85 320.1 196 71.4
Lsat_1_v5_gn_1_20261 Lactuca sativa HOM05D002103 ORTHO05D004020 3.7e-85 318.5 200 71.0
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 6.3e-85 317.8 198 71.2
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 1.1e-84 317.0 198 70.2
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 1.1e-84 317.0 198 70.2
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.4e-84 316.6 200 71.5
Migut.C00595 Erythranthe guttata HOM05D002103 ORTHO05D004020 2.4e-84 315.8 196 72.4
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 5.3e-84 314.7 193 72.0
DCAR_019463 Daucus carota HOM05D002103 ORTHO05D004020 6.9e-84 314.3 196 69.9
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 9.1e-84 313.9 209 68.9
Migut.N02702 Erythranthe guttata HOM05D002103 ORTHO05D004020 1.2e-83 313.5 198 70.2
SalBow3G3013 Salvia bowleyana HOM05D002103 ORTHO05D004020 5.9e-83 311.2 198 68.2
arahy.Tifrunner.gnm1.ann1.3IZ1KA Arachis hypogaea HOM05D002103 ORTHO05D004020 7.7e-83 310.8 198 69.7
arahy.Tifrunner.gnm1.ann1.II6H71 Arachis hypogaea HOM05D002103 ORTHO05D004020 7.7e-83 310.8 198 69.7
arahy.Tifrunner.gnm1.ann1.YT15EQ Arachis hypogaea HOM05D002103 ORTHO05D004020 7.7e-83 310.8 198 69.7
Lj4A775T63 Lonicera japonica HOM05D002103 ORTHO05D004020 1.0e-82 310.5 198 69.7
Lsat_1_v5_gn_6_113661 Lactuca sativa HOM05D002103 ORTHO05D004020 2.9e-82 308.9 196 68.4
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 2.9e-82 308.9 198 68.2
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 6.5e-82 307.8 161 86.3
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 8.5e-82 307.4 194 70.1
TWI56G0490 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 8.5e-82 307.4 199 70.9
vmacro21537 Vaccinium macrocarpon HOM05D002103 ORTHO05D004020 1.9e-81 306.2 198 67.2
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 2.5e-81 305.8 199 68.8
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 5.5e-81 304.7 198 68.2
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 5.5e-81 304.7 199 69.3
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 7.2e-81 304.3 197 68.0
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 7.2e-81 304.3 198 67.7
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 4.7e-80 301.6 198 68.2
Glyma.06G038500 Glycine max HOM05D002103 ORTHO05D004020 7.9e-80 300.8 196 67.3
Lalb_Chr14g0368771 Lupinus albus HOM05D002103 ORTHO05D004020 7.9e-80 300.8 196 69.9
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.0e-79 300.4 197 69.0
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 1.0e-79 300.4 199 67.8
Glyma.14G082000 Glycine max HOM05D002103 ORTHO05D004020 1.8e-79 299.7 198 67.2
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 2.3e-79 299.3 196 67.3
arahy.Tifrunner.gnm1.ann1.Z2DAXP Arachis hypogaea HOM05D002103 ORTHO05D004020 2.3e-79 299.3 194 67.5
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 2.3e-79 299.3 199 69.8
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 2.3e-79 299.3 199 69.8
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 3.0e-79 298.9 199 68.8
Rhsim06G0048300 Rhododendron simsii HOM05D002103 ORTHO05D004020 3.0e-79 298.9 198 66.2
VMungo0647G0899 Vigna mungo HOM05D002103 ORTHO05D004020 3.0e-79 298.9 198 66.2
Glyma.04G037600 Glycine max HOM05D002103 ORTHO05D004020 5.1e-79 298.1 196 66.8
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 8.8e-79 297.4 194 66.5
ClCG08G015730 Citrullus lanatus HOM05D002103 ORTHO05D004020 1.1e-78 297.0 199 66.3
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.1e-78 297.0 199 66.3
SalBow7G3772 Salvia bowleyana HOM05D002103 ORTHO05D004020 1.1e-78 297.0 220 62.7
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 1.5e-78 296.6 199 66.3
QL02p005379 Quercus lobata HOM05D002103 ORTHO05D004020 1.5e-78 296.6 207 65.2
Lalb_Chr22g0355191 Lupinus albus HOM05D002103 ORTHO05D004020 2.0e-78 296.2 198 67.7
Lalb_Chr23g0266991 Lupinus albus HOM05D002103 ORTHO05D004020 2.0e-78 296.2 198 66.7
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 3.3e-78 295.4 197 67.0
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 3.3e-78 295.4 202 66.8
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 4.4e-78 295.0 199 65.8
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.4e-78 295.0 199 66.3
Lj5g0018432 Lotus japonicus HOM05D002103 ORTHO05D004020 4.4e-78 295.0 198 65.7
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 5.7e-78 294.7 202 66.8
Medtr3g101480 Medicago truncatula HOM05D002103 ORTHO05D004020 5.7e-78 294.7 196 67.3
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 9.7e-78 293.9 201 66.2
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 1.7e-77 293.1 201 66.7
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 1.7e-77 293.1 199 64.8
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 2.2e-77 292.7 200 66.0
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 2.8e-77 292.4 199 66.8
Medtr1g019780 Medicago truncatula HOM05D002103 ORTHO05D004020 2.8e-77 292.4 198 65.7
Phvul.001G021000 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 3.7e-77 292.0 198 65.7
Potri.002G127700 Populus trichocarpa HOM05D002103 ORTHO05D004020 3.7e-77 292.0 199 66.8
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 6.3e-77 291.2 198 65.2
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 1.1e-76 290.4 200 66.5
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 1.4e-76 290.0 199 64.8
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.8e-76 289.7 199 64.3
Lj4A54G47 Lonicera japonica HOM05D002103 ORTHO05D004020 1.8e-76 289.7 198 63.1
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 2.4e-76 289.3 200 66.0
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 3.1e-76 288.9 196 66.8
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 4.1e-76 288.5 197 66.0
BolC3t20965H Brassica oleracea HOM05D002103 ORTHO05D004020 5.3e-76 288.1 200 66.0
Psat6g012640 Pisum sativum HOM05D002103 ORTHO05D004020 5.3e-76 288.1 198 64.1
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 6.9e-76 287.7 200 66.0
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 6.9e-76 287.7 200 66.0
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 6.9e-76 287.7 200 66.0
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 9.1e-76 287.3 196 66.3
Carub.0007s0711 Capsella rubella HOM05D002103 ORTHO05D004020 9.1e-76 287.3 200 65.5
AL7G18190 Arabidopsis lyrata HOM05D002103 ORTHO05D004020 1.2e-75 287.0 199 65.3
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 1.2e-75 287.0 198 66.2
AT4G33380 Arabidopsis thaliana HOM05D002103 ORTHO05D004020 1.5e-75 286.6 199 65.8
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 2.6e-75 285.8 200 64.5
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 2.6e-75 285.8 199 65.8
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 2.6e-75 285.8 199 66.3
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 3.4e-75 285.4 200 65.5
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 3.4e-75 285.4 196 64.8
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 4.5e-75 285.0 200 65.5
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 7.7e-75 284.3 200 65.0
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 1.0e-74 283.9 219 60.7
Hund17586 Selenicereus undatus HOM05D002103 ORTHO05D004020 1.3e-74 283.5 199 64.3
BcaC09g52142 Brassica carinata HOM05D002103 ORTHO05D004020 2.9e-74 282.3 196 65.8
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 2.9e-74 282.3 163 72.4
Duzib116G0153 Durio zibethinus HOM05D002103 ORTHO05D004020 3.8e-74 282.0 201 64.2
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 3.8e-74 282.0 199 65.3
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 5.0e-74 281.6 163 72.4
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 5.0e-74 281.6 199 65.3
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 8.5e-74 280.8 197 65.5
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 1.9e-73 279.6 199 63.8
Atru.chr11.91 Acer truncatum HOM05D002103 ORTHO05D004020 2.5e-73 279.3 199 64.8
AUR62022428 Chenopodium quinoa HOM05D002103 ORTHO05D004020 3.2e-73 278.9 199 61.3
AUR62039305 Chenopodium quinoa HOM05D002103 ORTHO05D004020 4.2e-73 278.5 199 60.8
Os06g0214100 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 4.2e-73 278.5 198 64.6
Gohir.D01G106900 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.2e-72 276.9 201 64.2
Gorai.002G131200 Gossypium raimondii HOM05D002103 ORTHO05D004020 3.6e-72 275.4 201 63.7
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.7e-72 275.0 201 63.7
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 4.7e-72 275.0 196 64.3
Psat0s3123g0080 Pisum sativum HOM05D002103 ORTHO05D004020 6.1e-72 274.6 198 61.6
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 6.1e-72 274.6 195 61.0
arahy.Tifrunner.gnm1.ann1.S2AHNK Arachis hypogaea HOM05D002103 ORTHO05D004020 1.4e-71 273.5 198 62.6
arahy.Tifrunner.gnm1.ann1.VN362G Arachis hypogaea HOM05D002103 ORTHO05D004020 1.4e-71 273.5 198 62.6
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 1.8e-71 273.1 190 66.3
Ah.05g168830 Amaranthus hybridus HOM05D002103 ORTHO05D004020 3.9e-71 271.9 199 61.3
Aqoxy6G01360 Aquilegia oxysepala HOM05D002103 ORTHO05D004020 1.1e-70 270.4 198 60.6
Os02g0761600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 1.1e-70 270.4 198 63.1
CDE02G4038 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 2.0e-70 269.6 175 68.6
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 2.6e-70 269.2 198 62.1
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 2.8e-69 265.8 197 60.9
FAN20G2977 Fragaria x ananassa HOM05D002103 ORTHO05D004020 2.8e-69 265.8 195 62.1
FvH4_2g34620 Fragaria vesca HOM05D002103 ORTHO05D004020 4.8e-69 265.0 195 62.1
RcHm_v2.0_Chr6g0307681 Rosa chinensis HOM05D002103 ORTHO05D004020 6.3e-69 264.6 193 61.1
FAN27G3124 Fragaria x ananassa HOM05D002103 ORTHO05D004020 5.3e-68 261.5 195 60.5
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 7.7e-67 257.7 177 68.4
PSO541G4087 Papaver somniferum HOM05D002103 ORTHO05D004020 1.7e-66 256.5 199 59.8
PSO675G6562 Papaver somniferum HOM05D002103 ORTHO05D004020 1.1e-65 253.8 204 59.3
Zm00001eb255700 Zea mays HOM05D002103 ORTHO05D004020 1.6e-64 250.0 198 60.6
CSS0001953 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 2.7e-64 249.2 198 59.6
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 8.0e-64 247.7 162 68.5
ATR0100G056 Amborella trichopoda HOM05D002103 ORTHO05D004020 1.2e-62 243.8 191 58.6
Zm00001eb279800 Zea mays HOM05D002103 ORTHO05D004020 4.8e-61 238.4 166 64.5
HPP92_027223 Vanilla planifolia HOM05D002103 ORTHO05D004020 2.2e-58 229.6 196 51.5
SEGI_41572 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 1.8e-55 219.9 206 51.5
RcHm_v2.0_Chr6g0307521 Rosa chinensis HOM05D002103 ORTHO05D004020 2.3e-55 219.5 172 58.7
Actinidia22618 Actinidia chinensis HOM05D002103 ORTHO05D004020 5.7e-54 214.9 121 74.4
TPR.G13687 Trifolium pratense HOM05D002103 ORTHO05D004020 7.5e-54 214.5 243 45.7
Aa31LG3G7420 Aethionema arabicum HOM05D002103 ORTHO05D004020 9.8e-54 214.2 198 54.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 5.5e-49 198.4 210 48.1
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.4e-47 193.7 209 49.3
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.0e-47 192.6 199 48.7
Psat3g152440 Pisum sativum HOM05D002103 ORTHO05D004020 1.7e-45 186.8 157 54.1
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.2e-45 186.4 202 44.6
Psat7g222680 Pisum sativum HOM05D002103 ORTHO05D004020 7.0e-44 181.4 157 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 3.5e-43 179.1 201 44.8
AagrBONN_evm.TU.Sc2ySwM_362.2117 Anthoceros agrestis HOM05D002103 ORTHO05D004020 6.4e-37 158.3 117 58.1
Oeu006152.1 Olea europaea HOM05D002103 ORTHO05D004020 1.9e-36 156.8 83 81.9
RcHm_v2.0_Chr6g0258511 Rosa chinensis HOM05D002103 ORTHO05D004020 2.1e-32 143.3 86 67.4
Lj3A736T18 Lonicera japonica HOM05D002103 ORTHO05D004020 1.2e-30 137.5 111 57.7
Pp3c27_1800 Physcomitrium patens HOM05D002103 ORTHO05D004020 1.1e-28 131.0 152 45.4
Pp3c5_13510 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.0e-26 122.9 166 41.6
A03p61950 Brassica napus HOM05D002198 ORTHO05D002409 5.2e-23 112.1 143 42.7
unitig_61.g26339 Utricularia gibba HOM05D002103 ORTHO05D004020 3.7e-21 105.9 90 53.3
MCO12G397 Micromonas commoda HOM05D002103 ORTHO05D004020 5.4e-20 102.1 127 40.9
MCO11G730 Micromonas commoda HOM05D002103 ORTHO05D004020 1.6e-19 100.5 118 38.1
BraA03t15234Z Brassica rapa HOM05D002103 ORTHO05D004020 1.0e-18 97.8 108 45.4
MSTRG.22266 Avicennia marina HOM05D002103 ORTHO05D004020 1.3e-18 97.4 73 65.8
PRCOL_00001864 Prasinoderma coloniale HOM05D002103 ORTHO05D004020 2.8e-16 89.7 124 36.3
PRCOL_00003789 Prasinoderma coloniale HOM05D002103 ORTHO05D004020 3.1e-15 86.3 197 33.0
SMO271G0025 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.0e-14 83.6 62 56.5
unitig_61.g26338 Utricularia gibba HOM05D000186 ORTHO05D017738 2.6e-14 83.2 46 69.6
Prupe.3G111800 Prunus persica HOM05D002103 ORTHO05D004020 4.4e-14 82.4 48 64.6
Cre01.g032600 Chlamydomonas reinhardtii HOM05D001570 ORTHO05D001566 1.7e-13 80.5 112 36.6
Cre06.g262300 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D000392 1.9e-12 77.0 157 33.1
PRCOL_00001236 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 7.8e-11 71.6 149 34.9
Pp3c22_5260 Physcomitrium patens HOM05D002103 ORTHO05D004020 8.7e-10 68.2 99 34.3
MCO16G503 Micromonas commoda HOM05D002103 ORTHO05D269009 3.6e-08 62.8 110 31.8
Cre03.g163450 Chlamydomonas reinhardtii HOM05D002103 ORTHO05D144171 1.1e-07 61.2 90 37.8
Cre06.g307800 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D003756 9.0e-07 58.2 86 32.6


User provided reference genes

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