Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.1e-295 1019.2 510 100.0
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.0e-281 971.8 510 95.5
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.1e-246 855.5 510 85.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 8.9e-242 840.1 511 83.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.5e-241 839.3 510 84.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.2e-240 835.5 511 82.8
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.1e-210 736.9 438 84.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-200 703.4 514 69.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 6.3e-195 684.5 512 67.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 7.7e-193 677.6 516 67.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 2.1e-190 669.5 515 66.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 6.1e-190 667.9 508 67.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.9e-189 665.2 509 65.2
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.6e-188 662.5 506 65.6
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.6e-188 662.5 515 66.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.6e-188 662.5 510 64.9
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.4e-188 661.8 513 65.5
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.2e-187 659.4 513 65.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.1e-186 655.6 512 64.8
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 4.1e-186 655.2 513 65.5
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 5.3e-186 654.8 514 64.8
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.0e-185 652.9 516 64.9
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.5e-185 652.1 513 65.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.5e-185 651.7 513 64.7
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 5.9e-185 651.4 506 64.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 3.8e-184 648.7 468 70.5
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.0e-184 648.3 520 63.5
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 8.5e-184 647.5 518 65.3
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.1e-183 647.1 511 64.8
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-183 646.7 512 64.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.9e-183 646.4 518 65.1
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.9e-183 646.4 574 60.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 3.2e-183 645.6 512 65.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 5.5e-183 644.8 537 62.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 5.5e-183 644.8 509 65.4
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 9.4e-183 644.0 510 64.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.2e-182 643.7 512 64.6
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-182 643.3 518 64.7
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 3.6e-182 642.1 514 63.6
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 6.1e-182 641.3 513 63.5
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.1e-182 641.3 512 63.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.8e-181 639.8 513 64.1
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.8e-181 639.8 513 63.7
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 3.0e-181 639.0 516 63.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 5.2e-181 638.3 508 65.0
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 8.8e-181 637.5 512 63.7
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-180 636.0 520 63.1
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.2e-179 632.9 512 64.5
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 3.7e-179 632.1 519 62.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.1e-178 630.6 513 64.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 4.1e-178 628.6 509 64.0
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 9.1e-178 627.5 512 62.9
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 5.9e-177 624.8 597 56.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 5.9e-177 624.8 521 63.0
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.2e-176 622.9 511 63.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.2e-176 622.9 469 67.2
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-176 622.5 511 61.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-176 622.5 511 61.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.9e-176 622.5 512 61.9
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-176 622.1 518 62.2
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 5.0e-176 621.7 481 66.1
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.5e-175 620.2 517 61.5
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.9e-175 619.8 471 66.9
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.5e-175 619.4 513 62.6
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 5.5e-175 618.2 514 62.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 9.4e-175 617.5 511 62.8
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.7e-174 615.9 519 61.1
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.7e-174 615.1 512 62.7
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.1e-174 614.8 519 60.9
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.0e-173 614.0 517 60.3
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.0e-172 609.8 513 62.6
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.4e-172 609.0 512 61.7
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.4e-172 608.6 444 69.6
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 7.5e-172 607.8 512 61.3
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 7.5e-172 607.8 571 57.3
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 9.8e-172 607.4 512 61.3
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.2e-171 606.3 510 61.2
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.2e-171 606.3 512 61.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 4.8e-171 605.1 554 58.8
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 4.1e-170 602.1 512 60.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 7.0e-170 601.3 512 61.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 9.1e-170 600.9 512 60.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 9.1e-170 600.9 512 60.9
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 3.5e-169 599.0 508 62.2
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.8e-168 595.5 468 64.1
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 3.2e-167 592.4 508 60.6
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.6e-166 590.1 467 64.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.1e-166 589.7 465 64.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 8.0e-166 587.8 468 62.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.0e-165 587.4 468 63.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.3e-165 586.3 512 58.8
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 5.7e-164 581.6 480 60.8
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.8e-162 576.6 467 62.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.0e-161 573.2 462 62.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 5.9e-161 571.6 439 65.4
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 3.8e-160 568.9 551 56.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 6.6e-160 568.2 460 62.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.6e-158 562.4 480 61.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.2e-156 557.4 481 60.9
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.6e-156 556.2 493 59.4
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 7.8e-153 544.7 437 64.1
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-151 540.8 431 64.3
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.2e-147 526.6 468 57.7
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-144 515.4 407 66.6
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-141 506.9 376 69.7
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 6.8e-141 505.0 389 66.8
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 3.4e-140 502.7 477 55.1
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.2e-137 494.2 370 67.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 5.2e-133 478.8 508 51.8
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.3e-120 436.8 503 47.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.6e-120 435.3 453 53.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.6e-118 429.5 690 43.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.3e-115 421.0 392 58.4
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.9e-112 409.5 462 49.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-110 404.1 382 55.5
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-110 403.7 383 59.3
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.7e-110 402.9 453 48.3
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.8e-100 369.0 512 43.8
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.6e-92 343.6 276 61.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-89 333.6 332 57.8
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.3e-71 273.5 477 36.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.7e-62 244.6 475 35.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 9.1e-61 238.8 235 54.9
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.5e-60 236.5 490 35.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 8.0e-57 225.7 218 55.0
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.0e-56 223.8 157 72.0
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 8.6e-51 205.7 380 33.9
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.7e-46 190.3 509 30.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 2.3e-40 171.0 207 42.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 4.0e-32 143.7 257 37.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-30 137.9 92 72.8
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.9e-29 134.8 93 69.9
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 6.0e-28 129.8 130 51.5
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-22 112.1 104 55.8
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.8e-17 94.4 354 24.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.8e-16 89.7 67 64.2
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.9e-11 73.9 44 70.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 6.6e-11 73.2 49 69.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.0e-08 63.9 66 57.6


User provided reference genes

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