Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.6e-127 457.6 269 100.0
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.2e-122 442.6 269 98.1
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.9e-114 415.6 269 91.8
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.8e-101 372.5 278 83.8
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.4e-100 369.4 269 84.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.1e-92 342.4 226 91.6
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 3.8e-74 282.3 241 68.9
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.8e-69 266.2 264 54.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 3.7e-69 265.8 259 54.4
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-68 263.8 265 53.2
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-68 263.8 265 53.2
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.4e-68 263.1 213 60.6
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.1e-68 262.3 255 54.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 6.9e-68 261.5 254 55.9
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 3.4e-67 259.2 233 56.7
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 7.7e-67 258.1 231 58.0
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.0e-66 257.7 249 62.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.7e-66 256.9 260 52.7
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 6.5e-66 255.0 281 50.9
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.1e-65 254.2 259 54.1
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.4e-65 253.8 225 59.6
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.9e-65 253.4 232 59.9
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 2.5e-65 253.1 204 62.7
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 4.2e-65 252.3 214 60.3
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 5.5e-65 251.9 264 50.4
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 7.2e-65 251.5 263 52.1
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 9.4e-65 251.1 254 53.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.6e-64 250.4 258 61.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.1e-64 250.0 273 50.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 7.9e-64 248.1 269 53.5
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.0e-63 247.7 246 55.3
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.8e-63 246.9 259 52.5
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.8e-63 246.9 283 47.7
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.8e-63 246.9 272 52.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 2.3e-63 246.5 255 54.9
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 8.8e-63 244.6 260 55.8
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.1e-62 244.2 263 50.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.5e-62 243.8 249 63.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.6e-62 243.0 286 55.9
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 2.6e-62 243.0 207 63.8
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 2.6e-62 243.0 259 51.7
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.4e-62 242.3 239 54.0
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 7.4e-62 241.5 259 52.1
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.3e-61 240.7 206 64.1
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.3e-61 240.7 246 52.0
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.2e-61 240.0 204 61.8
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.8e-61 239.6 254 60.2
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 3.7e-61 239.2 206 59.2
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.7e-61 239.2 186 62.4
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 8.2e-61 238.0 205 63.9
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.1e-60 237.7 213 65.7
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 6.9e-60 235.0 274 51.1
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-59 234.2 188 61.7
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.0e-59 233.4 227 62.1
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.4e-59 232.6 252 54.4
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 7.7e-59 231.5 204 59.3
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 7.7e-59 231.5 212 56.6
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.0e-58 231.1 201 56.7
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.3e-58 230.7 245 51.0
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.3e-58 230.7 216 55.1
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.3e-58 230.7 241 50.6
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.7e-58 230.3 209 56.5
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.9e-58 229.6 266 56.0
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 3.8e-58 229.2 254 54.7
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 3.8e-58 229.2 221 52.9
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.9e-57 226.9 210 59.0
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.5e-57 226.5 226 52.2
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.2e-57 226.1 200 63.5
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.2e-56 224.2 187 59.9
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 2.1e-56 223.4 256 59.4
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 3.6e-56 222.6 256 59.4
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 6.1e-56 221.9 215 52.1
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.0e-55 221.1 197 59.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.4e-55 220.7 210 57.6
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.8e-55 220.3 257 59.9
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 3.0e-55 219.5 237 50.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 3.9e-55 219.2 266 48.5
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 3.9e-55 219.2 202 59.9
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 5.2e-55 218.8 234 59.8
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.2e-55 218.8 219 51.6
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.2e-55 218.8 243 58.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 5.2e-55 218.8 200 55.0
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 5.2e-55 218.8 245 49.8
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-54 217.6 203 57.6
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.0e-54 216.9 183 61.7
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 2.0e-54 216.9 194 72.7
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 2.6e-54 216.5 198 53.5
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.3e-54 216.1 253 54.9
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 4.4e-54 215.7 204 70.6
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.3e-53 214.2 218 60.6
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.3e-53 214.2 218 60.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.8e-53 212.2 243 57.2
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.8e-53 212.2 243 57.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 6.3e-53 211.8 203 53.2
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 6.3e-53 211.8 206 50.0
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.1e-52 211.1 199 62.8
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 4.1e-52 209.1 204 60.8
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 9.1e-52 208.0 194 69.1
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.6e-51 206.5 231 62.3
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.6e-51 206.5 274 51.5
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.6e-51 206.5 203 50.7
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 3.5e-51 206.1 274 51.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.7e-50 203.8 237 47.3
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.0e-50 202.2 263 55.9
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.0e-50 202.2 263 55.9
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 6.5e-50 201.8 190 52.6
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 8.5e-50 201.4 254 46.1
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.1e-49 201.1 196 62.2
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 6.1e-48 195.3 249 45.0
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.0e-48 194.9 218 56.0
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.0e-48 194.9 218 56.0
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 8.0e-48 194.9 218 56.0
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.4e-47 194.1 201 61.2
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.4e-47 194.1 218 56.0
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.8e-47 193.7 207 59.4
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.6e-46 189.9 257 51.0
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 5.7e-46 188.7 254 53.9
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.2e-45 186.8 199 47.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 6.3e-45 185.3 205 62.0
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 4.1e-44 182.6 231 49.8
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.2e-43 181.0 176 47.7
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.6e-43 180.6 155 56.8
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.0e-43 180.3 214 45.3
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.0e-43 180.3 214 45.3
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 5.9e-43 178.7 188 48.9
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-42 176.8 254 44.1
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.1e-41 174.5 253 43.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.2e-40 171.0 171 58.5
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 8.0e-40 168.3 211 44.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.0e-39 167.9 199 43.2
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.8e-39 167.2 189 51.3
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 4.0e-39 166.0 190 45.8
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 8.8e-39 164.9 166 63.9
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 4.4e-38 162.5 127 64.6
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.5e-38 161.8 240 39.6
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 9.8e-38 161.4 228 53.9
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 5.4e-36 155.6 200 42.0
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-34 151.4 202 50.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-34 151.4 198 50.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.1e-33 147.9 207 56.0
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.1e-33 147.9 191 39.8
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.5e-33 147.5 199 41.2
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 8.0e-32 141.7 194 41.8
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.3e-31 140.2 203 40.4
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.3e-31 140.2 203 40.9
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.0e-31 139.8 209 35.9
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.2e-30 137.9 194 38.1
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.0e-30 137.1 194 38.1
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.7e-29 134.0 200 37.5
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.8e-29 133.3 185 37.3
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.4e-28 130.2 245 34.3
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.0e-27 127.1 269 35.7
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 2.7e-27 126.7 225 35.6
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.8e-27 125.2 197 36.5
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.3e-26 123.6 150 42.0
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-24 117.9 99 58.6
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 5.2e-23 112.5 125 52.8
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 8.3e-21 105.1 202 36.1
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 9.2e-20 101.7 158 34.8
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.6e-18 95.5 158 32.9
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 5.8e-14 82.4 97 46.4
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 3.2e-12 76.6 61 57.4
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 2.0e-11 73.9 215 26.5
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 3.0e-10 70.1 53 56.6
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.9e-09 67.4 51 54.9
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.2e-08 64.7 53 56.6
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.2e-08 64.7 42 69.0
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 2.3e-07 60.5 217 24.4
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 4.4e-06 56.2 161 26.1


User provided reference genes

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