Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 9.1e-123 443.7 249 100.0
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.5e-117 426.4 243 97.5
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 5.9e-106 387.9 250 89.2
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.3e-105 386.0 250 88.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.1e-104 383.6 250 87.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.1e-99 367.1 249 79.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.4e-99 366.7 257 84.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.9e-98 361.3 249 79.9
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.1e-96 357.1 239 82.4
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.1e-96 357.1 251 80.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.3e-96 355.5 251 79.7
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 4.3e-96 355.1 250 78.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 9.5e-96 354.0 250 80.4
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.2e-95 353.6 250 79.2
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-95 353.2 247 77.7
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.6e-95 353.2 250 78.8
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.1e-95 352.8 251 79.7
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.1e-95 352.8 202 87.6
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.8e-95 352.4 251 75.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 4.7e-95 351.7 251 79.3
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 6.2e-95 351.3 253 78.7
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.8e-94 347.8 243 76.5
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.2e-93 347.1 252 77.4
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.2e-93 347.1 250 78.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.5e-93 346.7 247 77.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 4.4e-93 345.1 250 76.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.4e-93 345.1 250 76.0
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.8e-93 344.7 250 75.2
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 7.5e-93 344.4 248 73.0
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 3.7e-92 342.0 250 75.6
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.1e-91 340.5 247 77.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.4e-91 340.1 249 77.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.4e-91 338.2 247 76.1
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.4e-91 338.2 260 72.7
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 7.0e-91 337.8 248 71.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 7.0e-91 337.8 251 77.3
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.2e-90 337.0 248 73.4
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.2e-90 337.0 250 76.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.2e-90 337.0 247 75.7
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.0e-90 336.3 249 75.9
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 2.7e-90 335.9 251 77.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.5e-90 335.5 246 76.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 6.0e-90 334.7 247 75.3
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.3e-89 332.8 250 76.8
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 6.6e-89 331.3 250 75.2
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 8.6e-89 330.9 249 74.3
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.1e-88 330.5 251 76.1
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-88 330.1 246 74.4
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.5e-88 329.3 253 75.5
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.5e-88 329.3 250 74.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 4.3e-88 328.6 249 71.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 7.3e-88 327.8 250 76.0
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.6e-87 326.6 251 71.7
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-87 325.1 246 73.6
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 6.2e-87 324.7 251 74.5
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 6.2e-87 324.7 250 73.6
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-86 323.9 248 73.8
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.1e-86 323.9 246 74.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.8e-86 323.2 249 74.7
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 3.1e-86 322.4 237 75.9
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 3.1e-86 322.4 250 71.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 4.0e-86 322.0 238 76.1
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 6.8e-86 321.2 252 71.0
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 6.8e-86 321.2 250 73.2
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.2e-85 320.5 238 76.1
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.2e-85 320.5 241 75.5
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 4.4e-85 318.5 251 71.7
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 9.9e-85 317.4 252 73.0
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 9.9e-85 317.4 247 75.3
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.3e-84 317.0 250 67.6
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.3e-84 317.0 209 76.1
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.7e-84 316.6 237 73.8
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.2e-84 316.2 251 73.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 3.7e-84 315.5 237 74.3
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.9e-84 315.1 251 73.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 8.3e-84 314.3 251 68.9
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-83 313.9 236 74.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.1e-83 313.9 245 73.1
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 3.2e-83 312.4 247 70.9
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 7.1e-83 311.2 243 74.5
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 7.1e-83 311.2 260 69.2
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.1e-83 311.2 250 72.8
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 2.7e-82 309.3 346 54.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.0e-81 307.4 247 70.4
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.3e-81 307.0 246 73.2
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.7e-81 306.6 244 69.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.3e-81 306.2 246 72.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 3.0e-81 305.8 243 71.6
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 3.0e-81 305.8 267 68.5
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.6e-81 304.3 252 70.6
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.5e-80 303.5 239 66.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.5e-80 303.5 252 70.6
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 4.3e-80 302.0 246 70.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 9.5e-80 300.8 244 70.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 9.5e-80 300.8 194 78.4
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.1e-79 299.7 247 68.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 8.1e-79 297.7 249 69.1
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 8.1e-79 297.7 247 68.4
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.4e-78 297.0 247 68.0
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.8e-77 291.6 246 65.4
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.8e-76 288.9 226 66.4
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-75 287.3 250 69.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-75 287.0 250 69.2
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.9e-75 286.6 293 61.4
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.9e-75 286.6 248 68.5
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 7.1e-75 284.6 249 68.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.7e-73 280.0 271 63.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 6.2e-71 271.6 252 61.5
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.0e-70 268.9 334 53.3
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.0e-70 268.9 246 61.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 3.2e-67 259.2 240 65.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.6e-66 255.4 248 61.3
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.0e-66 255.0 247 61.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.3e-65 253.1 253 60.9
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.9e-65 252.3 283 52.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.6e-63 246.9 176 69.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.6e-58 228.8 242 58.3
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.0e-57 227.6 245 57.1
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 3.0e-57 226.1 247 57.5
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.9e-57 225.7 245 55.1
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.4e-56 221.5 148 77.7
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.8e-54 216.9 223 53.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.5e-53 213.8 220 54.5
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 9.9e-53 211.1 136 79.4
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 6.7e-49 198.4 167 68.3
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 7.4e-48 194.9 130 74.6
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 7.6e-45 184.9 140 70.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.0e-41 172.9 133 66.9
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.3e-40 169.5 143 72.0
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.2e-39 166.8 191 50.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.8e-38 163.7 256 41.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 5.5e-35 152.1 194 54.1
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.5e-32 143.3 337 39.8
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.1e-30 136.0 225 37.8
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 5.3e-30 135.6 107 77.6
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-29 134.0 103 76.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.5e-29 134.0 229 37.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 4.5e-29 132.5 227 37.9
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.2e-26 124.4 91 69.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 3.7e-23 112.8 71 80.3
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.8e-22 110.5 60 85.0
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.5e-21 107.5 98 58.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 4.5e-21 105.9 78 67.9
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.9e-13 79.0 76 69.7
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 9.4e-11 71.6 160 35.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 4.4e-08 62.8 58 55.2
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.2e-07 60.5 34 73.5
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 4.8e-07 59.3 38 71.1
Cfa024493 Carpinus fangiana HOM05D003486 ORTHO05D124746 2.4e-06 57.0 120 28.3


User provided reference genes

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