Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 0.0e+00 1472.2 858 100.0
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 2.0e-278 962.6 1230 54.9
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.4e-276 956.4 1235 54.7
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.1e-275 952.6 1240 54.1
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 6.5e-253 877.9 1140 54.4
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 5.7e-164 582.4 1219 43.2
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 2.2e-160 570.5 1076 41.0
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 2.9e-160 570.1 743 58.1
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 2.1e-150 537.3 1142 38.3
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.4e-149 534.6 1259 40.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 8.2e-147 525.4 1280 39.8
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 2.6e-140 503.8 1248 38.1
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.2e-134 485.0 1230 38.1
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 1.2e-134 485.0 1044 40.6
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 1.0e-133 481.9 1283 38.0
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 8.8e-133 478.8 1224 38.6
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 6.3e-131 472.6 898 41.3
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-126 458.4 733 53.2
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 2.3e-125 454.1 1243 37.2
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 2.6e-124 450.7 1178 37.5
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 5.7e-124 449.5 1210 38.0
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 9.8e-124 448.7 1005 40.5
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.1e-122 445.3 755 52.5
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 5.4e-122 443.0 1058 39.0
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.9e-120 437.2 1080 38.6
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 3.8e-120 436.8 1089 39.1
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 3.8e-120 436.8 1244 36.5
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 9.5e-119 432.2 1256 36.8
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 4.7e-118 429.9 1189 37.6
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 6.1e-118 429.5 1213 38.7
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.4e-117 428.3 1201 37.3
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.3e-117 427.6 1222 38.4
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 1.2e-116 425.2 1247 36.5
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 9.8e-116 422.2 744 52.3
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-115 421.8 1253 35.7
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 2.8e-115 420.6 1214 37.1
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 8.3e-115 419.1 1244 36.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 9.2e-114 415.6 695 52.2
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.2e-113 415.2 1267 36.2
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 2.0e-113 414.5 1255 37.1
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.7e-113 414.1 737 49.7
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.5e-113 413.7 1248 36.3
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 5.9e-113 412.9 1257 35.6
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 2.9e-112 410.6 1175 37.3
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 3.8e-112 410.2 1213 35.6
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 2.5e-111 407.5 489 55.6
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 9.5e-111 405.6 1029 39.5
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 9.5e-111 405.6 1267 38.1
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 6.1e-110 402.9 767 46.4
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.8e-109 401.4 1238 35.5
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 6.8e-109 399.4 1243 35.6
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.2e-108 398.7 820 46.3
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.5e-108 398.3 1182 36.5
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 2.6e-108 397.5 1165 36.2
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 7.5e-108 396.0 1186 36.3
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.9e-107 393.3 495 51.5
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 4.9e-107 393.3 1190 36.6
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.1e-106 392.1 738 46.7
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.1e-106 392.1 1242 35.6
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 2.7e-105 387.5 765 47.7
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 6.6e-104 382.9 1213 35.8
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.9e-103 381.3 1257 34.7
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 4.7e-102 376.7 1243 35.5
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 3.1e-101 374.0 1255 34.3
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 9.8e-100 369.0 419 56.3
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 8.3e-99 365.9 1232 34.3
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.4e-98 364.4 490 51.2
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 6.0e-97 359.8 444 51.8
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 6.6e-96 356.3 765 46.3
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 2.5e-95 354.4 1213 35.4
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 6.2e-94 349.7 796 43.5
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.1e-93 349.0 530 47.5
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.7e-91 341.7 1056 32.3
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 1.7e-91 341.7 421 52.5
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 2.9e-91 340.9 411 50.9
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 4.1e-90 337.0 1251 34.2
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 7.1e-90 336.3 1402 31.7
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.6e-89 335.1 1148 32.5
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.7e-88 331.6 1146 33.9
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.9e-87 328.2 423 51.3
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.5e-87 327.8 1167 34.4
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.4e-85 322.0 434 49.8
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.4e-85 321.2 332 60.8
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.0e-85 320.5 419 49.6
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 2.0e-84 318.2 421 50.4
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 3.4e-84 317.4 418 50.2
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 9.9e-84 315.8 419 49.2
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-82 312.4 1009 35.8
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 4.1e-82 310.5 424 49.8
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 9.2e-82 309.3 438 47.5
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.5e-79 302.0 963 30.9
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 1.8e-77 295.0 506 47.0
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 2.4e-77 294.7 410 47.8
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.4e-77 294.7 436 46.3
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 2.5e-71 274.6 1141 34.4
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.3e-70 272.3 899 32.9
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 1.6e-70 271.9 1141 34.4
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 1.6e-70 271.9 1141 34.4
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 8.1e-70 269.6 380 48.7
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.5e-68 265.4 1025 33.1
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 3.4e-68 264.2 1026 33.1
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 8.4e-67 259.6 344 50.6
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 9.0e-61 239.6 744 37.2
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 9.0e-61 239.6 744 37.2
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 3.4e-60 237.7 279 53.8
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 8.4e-59 233.0 730 38.4
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.1e-56 223.8 221 57.9
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 2.5e-47 194.9 442 36.7
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 5.9e-44 183.7 129 70.5
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 4.2e-42 177.6 402 36.3
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 5.5e-42 177.2 221 50.7
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 5.5e-42 177.2 1007 32.1
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 7.2e-42 176.8 396 35.6
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 7.9e-41 173.3 348 39.4
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 1.7e-38 165.6 207 49.8
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 7.9e-33 146.7 517 39.1
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 3.0e-32 144.8 121 66.1
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 5.7e-31 140.6 121 63.6
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 9.7e-31 139.8 929 24.8
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 2.8e-30 138.3 299 36.1
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.2e-28 132.9 446 31.8
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 2.0e-28 132.1 128 64.8
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.1e-26 126.3 205 40.5
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.2e-25 122.9 864 30.8
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 4.7e-25 120.9 964 29.6
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 6.1e-25 120.6 842 24.9
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.4e-23 113.6 133 59.4
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 4.8e-22 110.9 179 40.2
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 6.3e-22 110.5 182 39.6
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 5.3e-21 107.5 105 51.4
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 9.1e-21 106.7 66 72.7
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 1.7e-19 102.4 168 35.7
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 9.4e-18 96.7 159 39.6
PGSC0003DMG400013791 Solanum tuberosum HOM05D036438 ORTHO05D033985 4.4e-15 87.8 60 73.3
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.8e-14 85.1 166 34.9
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.4e-13 82.8 323 27.6
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.8e-13 82.4 131 51.1
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 9.1e-13 80.1 72 52.8
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.2e-12 79.7 150 37.3
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.1e-10 73.2 67 59.7
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 9.4e-10 70.1 220 30.5
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.2e-09 69.7 246 29.3
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 4.7e-09 67.8 44 75.0
CAN.G868.4 Capsicum annuum HOM05D036438 ORTHO05D033985 1.0e-08 66.6 62 61.3
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 2.3e-08 65.5 61 60.7
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.8e-08 63.9 120 37.5
CAN.G793.40 Capsicum annuum HOM05D036438 ORTHO05D033985 7.5e-07 60.5 62 59.7
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 9.8e-07 60.1 51 58.8


User provided reference genes

Program Settings