Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 3.0e-187 658.3 316 100.0
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.3e-62 244.2 217 63.1
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.2e-58 231.1 176 67.6
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 9.7e-53 211.5 244 53.7
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.5e-50 204.1 226 52.7
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.3e-49 201.1 157 70.1
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 3.8e-49 199.5 186 62.4
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.0e-46 189.9 129 78.3
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 3.4e-42 176.4 197 54.8
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 1.3e-41 174.5 117 75.2
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 3.8e-41 172.9 277 44.0
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 1.9e-40 170.6 219 49.3
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.0e-38 163.3 143 65.7
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.6e-37 160.2 200 52.5
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.6e-37 160.2 200 52.5
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 6.3e-36 155.6 97 85.6
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 8.2e-36 155.2 182 56.0
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-35 154.5 226 44.2
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 5.3e-35 152.5 86 90.7
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 5.3e-35 152.5 86 90.7
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.3e-35 152.5 86 90.7
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 5.3e-35 152.5 96 83.3
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 5.3e-35 152.5 86 90.7
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 7.0e-35 152.1 87 88.5
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 9.1e-35 151.8 86 89.5
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 1.5e-34 151.0 123 65.0
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 7.7e-34 148.7 86 86.0
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.0e-33 148.3 86 88.4
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.0e-33 148.3 86 88.4
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.0e-33 148.3 86 88.4
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.0e-33 146.0 86 87.2
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.5e-33 145.6 97 78.4
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-32 144.4 86 86.0
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 1.9e-32 144.1 228 45.6
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 4.2e-32 142.9 86 84.9
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 4.2e-32 142.9 160 57.5
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 5.5e-32 142.5 86 84.9
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-31 141.0 87 82.8
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.6e-31 141.0 93 81.7
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.7e-31 140.2 86 82.6
Lsat_1_v5_gn_2_20580 Lactuca sativa HOM05D014900 ORTHO05D020265 1.0e-30 138.3 83 79.5
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 1.4e-30 137.9 93 77.4
Lsat_1_v5_gn_8_97340 Lactuca sativa HOM05D014900 ORTHO05D020265 1.4e-30 137.9 81 80.2
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 3.3e-29 133.3 74 90.5
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 4.4e-29 132.9 73 91.8
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.4e-29 132.9 73 91.8
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 4.4e-29 132.9 73 91.8
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 4.4e-29 132.9 73 91.8
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 4.4e-29 132.9 73 89.0
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 5.7e-29 132.5 80 86.2
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 9.7e-29 131.7 89 75.3
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 1.7e-28 131.0 79 82.3
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 2.2e-28 130.6 86 80.2
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.8e-28 130.2 70 90.0
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 8.2e-28 128.6 73 90.4
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.4e-27 127.9 86 79.1
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.8e-27 127.5 86 76.7
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 2.4e-27 127.1 223 44.4
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.1e-27 126.3 141 55.3
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 5.3e-27 125.9 76 86.8
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 7.0e-27 125.6 74 86.5
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.2e-26 124.8 78 80.8
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.6e-26 124.4 227 38.8
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 2.0e-26 124.0 199 43.7
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 4.5e-26 122.9 89 70.8
CAN.G798.2 Capsicum annuum HOM05D014900 ORTHO05D020265 5.9e-26 122.5 93 64.5
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 7.7e-26 122.1 99 67.7
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.0e-25 121.7 174 43.7
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-25 120.6 227 37.4
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 6.5e-25 119.0 66 89.4
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.5e-24 117.9 141 54.6
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 9.4e-24 115.2 84 73.8
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.6e-23 114.4 81 75.3
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 1.0e-22 111.7 94 66.0
Nitab4.5_0004533g0070 Nicotiana tabacum HOM05D014900 ORTHO05D020265 6.8e-22 109.0 80 66.2
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-21 108.2 68 80.9
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-21 107.1 69 78.3
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 3.4e-21 106.7 120 57.5
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 1.3e-20 104.8 68 79.4
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 3.7e-20 103.2 79 68.4
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 4.8e-20 102.8 64 82.8
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.8e-20 102.8 75 72.0
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 6.3e-20 102.4 82 70.7
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.1e-19 101.7 65 80.0
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.8e-19 100.9 79 68.4
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 1.8e-19 100.9 89 62.9
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 1.8e-19 100.9 70 75.7
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 1.2e-18 98.2 100 56.0
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.0e-18 97.4 65 69.2
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 3.5e-18 96.7 117 57.3
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 3.5e-18 96.7 117 57.3
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 3.5e-18 96.7 117 57.3
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 3.5e-18 96.7 117 57.3
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.5e-18 96.3 54 87.0
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 7.7e-18 95.5 190 39.5
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 7.7e-18 95.5 65 67.7
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 1.3e-17 94.7 56 80.4
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 5.0e-17 92.8 50 86.0
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 1.8e-14 84.3 68 64.7
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 4.0e-14 83.2 175 38.9
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.2e-14 82.8 56 80.4
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 5.2e-14 82.8 103 48.5
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.5e-13 81.3 117 47.9
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.3e-12 78.2 101 46.5
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.9e-12 76.3 49 81.6
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 8.3e-12 75.5 57 63.2
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 2.4e-11 73.9 158 38.6
EL10As15g24101 Beta vulgaris HOM05D014900 ORTHO05D018510 1.6e-10 71.2 63 58.7
CAN.G3.26 Capsicum annuum HOM05D001133 ORTHO05D000941 4.5e-10 69.7 34 91.2
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 5.9e-10 69.3 178 33.1
CSS0027819 Camellia sinensis var. sinensis HOM05D014900 ORTHO05D020265 1.0e-09 68.6 43 76.7
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 1.7e-09 67.8 44 65.9
MELO3C028157.2 Cucumis melo HOM05D000963 ORTHO05D011117 1.7e-09 67.8 44 68.2
MELO3C033790.2 Cucumis melo HOM05D000963 ORTHO05D011117 1.7e-09 67.8 44 68.2
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.7e-09 67.8 44 68.2
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.7e-09 67.8 44 68.2
Sopen06g015040 Solanum pennellii HOM05D000963 ORTHO05D011117 1.7e-09 67.8 44 68.2
PGSC0003DMG400039021 Solanum tuberosum HOM05D000963 ORTHO05D010201 1.7e-09 67.8 44 68.2
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.7e-09 67.8 44 68.2
unitig_8.g4107 Utricularia gibba HOM05D000963 ORTHO05D011117 2.9e-09 67.0 39 74.4
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 3.8e-09 66.6 91 46.2
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 3.8e-09 66.6 54 63.0
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 5.0e-09 66.2 44 65.9
Cpa.g.sc2719.1 Carica papaya HOM05D000963 ORTHO05D011117 5.0e-09 66.2 44 65.9
BcaB02g11354 Brassica carinata HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
BcaC04g20703 Brassica carinata HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
BcaC04g20780 Brassica carinata HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
BcaNung07084 Brassica carinata HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
C04p22530 Brassica napus HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
C09p24690 Brassica napus HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
C09p39370 Brassica napus HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
BolSC47t61068H Brassica oleracea HOM05D000963 ORTHO05D011117 6.6e-09 65.9 44 65.9
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 6.6e-09 65.9 31 93.5
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.6e-09 65.9 31 93.5
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.6e-09 65.9 31 93.5
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.6e-09 65.9 31 93.5
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.6e-09 65.9 31 93.5
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.6e-09 65.9 31 93.5
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 6.6e-09 65.9 31 93.5
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 1.5e-08 64.7 48 68.8
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 1.5e-08 64.7 48 68.8
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 1.5e-08 64.7 31 90.3
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 1.5e-08 64.7 48 68.8
CSS0012622 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D011117 1.5e-08 64.7 39 69.2
MELO3C027127.2 Cucumis melo HOM05D000963 ORTHO05D011117 1.5e-08 64.7 44 65.9
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 1.9e-08 64.3 31 90.3
MELO3C028252.2 Cucumis melo HOM05D000963 ORTHO05D011117 2.5e-08 63.9 44 65.9
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 3.3e-08 63.5 31 90.3
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 5.6e-08 62.8 31 90.3
Sopen01g027140 Solanum pennellii HOM05D000963 ORTHO05D011117 5.6e-08 62.8 31 87.1
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 7.2e-08 62.4 43 69.8
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 7.2e-08 62.4 120 40.0
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 9.5e-08 62.0 48 66.7
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 9.5e-08 62.0 48 66.7
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 9.5e-08 62.0 48 66.7
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 9.5e-08 62.0 48 66.7
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 9.5e-08 62.0 48 66.7
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 2.1e-07 60.8 35 85.7
SHI49523 Sapria himalayana HOM05D014900 ORTHO05D020265 2.1e-07 60.8 50 60.0
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.8e-07 60.5 47 61.7
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 3.6e-07 60.1 44 68.2
Oeu038562.1 Olea europaea HOM05D000963 ORTHO05D011117 4.7e-07 59.7 44 61.4
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.4e-06 58.2 31 87.1
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 3.0e-06 57.0 30 83.3
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 4.0e-06 56.6 103 47.6
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 5.2e-06 56.2 30 83.3
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 6.8e-06 55.8 34 76.5
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.8e-06 55.8 31 80.6
BraSC143t45648Z Brassica rapa HOM05D000963 ORTHO05D011117 8.9e-06 55.5 26 84.6


User provided reference genes

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