Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.1e-209 733.0 364 100.0
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 6.1e-192 674.1 364 91.8
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 7.5e-158 560.8 364 76.9
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 8.3e-157 557.4 365 77.0
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 3.6e-152 542.0 365 77.5
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 9.8e-150 533.9 364 75.8
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 2.0e-142 509.6 364 72.5
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 6.4e-117 424.9 369 59.1
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 3.3e-113 412.5 369 60.2
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 1.3e-112 410.6 367 57.2
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 1.1e-111 407.5 368 55.7
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 4.4e-110 402.1 366 56.6
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 1.4e-103 380.6 367 55.3
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 3.1e-103 379.4 365 54.5
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 4.5e-102 375.6 366 53.3
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 4.5e-102 375.6 367 53.1
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 7.6e-102 374.8 365 53.7
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 1.4e-100 370.5 370 52.2
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 2.4e-100 369.8 367 54.0
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.4e-100 369.8 370 51.9
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 7.1e-100 368.2 370 51.9
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 1.2e-99 367.5 429 48.3
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 5.1e-98 362.1 368 55.2
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 1.1e-97 360.9 367 52.0
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 1.5e-97 360.5 375 51.2
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 1.5e-97 360.5 370 51.4
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 2.5e-97 359.8 368 51.4
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 3.3e-97 359.4 370 50.3
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 2.1e-96 356.7 370 52.4
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 2.8e-96 356.3 373 51.2
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 8.1e-96 354.8 371 52.8
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 3.1e-95 352.8 373 51.7
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 4.0e-95 352.4 367 50.1
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.2e-94 350.9 368 50.5
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.6e-94 349.7 367 51.0
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 3.4e-94 349.4 371 48.8
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 4.9e-93 345.5 377 49.1
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 4.2e-92 342.4 369 51.5
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 7.1e-92 341.7 372 52.2
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 7.1e-92 341.7 367 50.4
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 1.6e-91 340.5 372 50.3
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 3.5e-91 339.3 373 47.5
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 7.9e-91 338.2 365 49.6
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 1.8e-90 337.0 372 48.7
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 3.9e-90 335.9 375 48.5
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 5.1e-90 335.5 413 44.3
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.1e-89 334.3 375 47.7
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 1.5e-89 334.0 366 47.0
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 2.5e-89 333.2 366 50.0
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 3.3e-89 332.8 370 48.6
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 4.3e-89 332.4 367 46.6
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 4.3e-89 332.4 365 49.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.3e-88 330.9 365 49.6
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.6e-88 330.5 374 47.6
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 6.2e-88 328.6 382 49.2
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 1.8e-87 327.0 377 48.0
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 5.3e-87 325.5 368 48.1
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 1.2e-86 324.3 367 49.9
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 1.5e-86 323.9 384 46.6
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 7.6e-86 321.6 364 51.4
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.0e-85 321.2 367 46.6
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 2.9e-85 319.7 369 48.2
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 6.5e-85 318.5 375 48.3
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 4.2e-84 315.8 372 47.8
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 7.1e-84 315.1 373 46.9
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 9.3e-84 314.7 366 47.5
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 2.1e-83 313.5 344 48.0
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 7.9e-83 311.6 377 46.7
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 7.9e-83 311.6 392 44.6
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 1.3e-82 310.8 376 48.1
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 1.8e-82 310.5 376 44.9
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 2.3e-82 310.1 380 47.9
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 3.9e-82 309.3 377 46.4
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 5.1e-82 308.9 372 44.1
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 1.9e-81 307.0 378 45.0
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 9.7e-81 304.7 377 49.3
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 1.3e-80 304.3 372 48.7
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 1.3e-80 304.3 373 48.3
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 8.2e-80 301.6 319 50.5
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 1.4e-79 300.8 371 46.9
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 2.4e-79 300.1 369 46.3
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.4e-79 300.1 379 47.0
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 2.4e-79 300.1 365 44.9
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 4.1e-79 299.3 377 48.8
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 1.5e-78 297.4 370 47.6
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 4.5e-78 295.8 347 48.1
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 2.2e-77 293.5 373 45.6
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 8.5e-77 291.6 373 44.5
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 1.4e-76 290.8 378 44.2
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 9.4e-76 288.1 364 45.1
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 1.0e-74 284.6 365 44.9
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 2.3e-74 283.5 374 46.5
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 3.0e-74 283.1 367 44.4
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 6.7e-74 282.0 373 43.2
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 6.7e-74 282.0 372 46.2
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 1.1e-73 281.2 394 41.1
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 2.0e-73 280.4 303 51.5
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 3.3e-73 279.6 370 46.8
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 9.7e-73 278.1 367 43.1
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 1.4e-71 274.2 367 42.5
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.5e-70 269.2 362 43.6
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 7.7e-70 268.5 375 45.1
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 1.9e-68 263.8 261 53.6
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 8.8e-66 255.0 355 43.4
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 2.0e-65 253.8 409 36.2
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.8e-64 250.0 336 43.2
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 3.8e-61 239.6 274 49.3
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 1.1e-60 238.0 407 36.4
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-59 233.4 171 64.3
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 8.2e-56 221.9 370 40.0
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 1.0e-53 214.9 275 47.6
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 1.4e-50 204.5 206 51.5
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 8.3e-48 195.3 173 55.5
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.8e-45 186.4 171 55.0
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 1.0e-42 178.3 277 45.1
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 1.3e-40 171.4 470 29.4
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.6e-35 154.5 148 49.3
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 2.9e-24 117.1 438 26.5
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 3.2e-23 113.6 81 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 3.0e-21 107.1 84 54.8
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 8.6e-21 105.5 91 57.1
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 1.9e-12 77.8 81 54.3
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 4.3e-12 76.6 367 24.5
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 2.8e-11 73.9 361 25.8
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 4.7e-11 73.2 402 25.4
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 3.1e-10 70.5 347 25.6
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 4.0e-10 70.1 364 23.4
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 5.2e-10 69.7 340 24.7
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 5.2e-10 69.7 363 23.4
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.4e-09 67.0 358 24.6
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 5.8e-09 66.2 374 25.1
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 5.8e-09 66.2 351 26.8
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 5.8e-09 66.2 136 35.3
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 5.8e-09 66.2 342 24.3
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 9.9e-09 65.5 346 24.3
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 9.9e-09 65.5 364 21.4
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.3e-08 65.1 354 24.9
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 1.3e-08 65.1 357 23.8
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.3e-08 65.1 351 25.1
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.3e-08 65.1 351 25.1
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 2.2e-08 64.3 345 24.6
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 2.9e-08 63.9 347 24.8
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 2.9e-08 63.9 372 22.0
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.7e-08 63.5 352 21.9
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 3.7e-08 63.5 363 25.6
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 4.9e-08 63.2 365 23.8
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 4.9e-08 63.2 346 23.7
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 1.1e-07 62.0 356 23.0
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 1.4e-07 61.6 419 22.9
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 1.9e-07 61.2 350 25.4
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 2.4e-07 60.8 120 31.7
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 2.4e-07 60.8 345 23.8
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 7.1e-07 59.3 345 22.3
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 7.1e-07 59.3 53 50.9
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 7.1e-07 59.3 371 22.9
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.2e-06 58.5 345 22.3
Zm00001eb367030 Zea mays HOM05D006130 ORTHO05D007491 1.2e-06 58.5 42 64.3
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 2.1e-06 57.8 335 23.6
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.1e-06 57.8 351 23.9
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 3.5e-06 57.0 340 22.9
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 4.6e-06 56.6 366 23.0
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 4.6e-06 56.6 107 26.2
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 7.8e-06 55.8 118 33.9
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 7.8e-06 55.8 351 21.9


User provided reference genes

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