Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.1e-298 1029.2 516 100.0
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 5.5e-231 804.3 524 80.3
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 3.3e-228 795.0 524 79.4
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 1.2e-201 706.8 533 72.8
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 4.0e-197 691.8 529 67.1
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 1.8e-189 666.4 522 65.9
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 8.9e-189 664.1 523 65.0
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 1.5e-188 663.3 420 81.7
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 9.8e-188 660.6 496 68.1
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 3.7e-187 658.7 525 64.0
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 3.7e-187 658.7 522 65.9
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 2.4e-186 656.0 525 64.4
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 2.4e-186 656.0 520 63.7
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 9.2e-186 654.1 530 62.6
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 2.7e-185 652.5 530 63.8
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 6.0e-185 651.4 522 63.2
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 2.3e-184 649.4 524 63.7
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.9e-184 648.7 545 61.5
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.9e-184 648.7 545 61.5
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.9e-184 648.7 545 61.5
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 5.0e-184 648.3 530 62.6
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 3.3e-183 645.6 530 63.6
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 2.1e-182 642.9 447 71.1
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 4.7e-182 641.7 991 44.5
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 6.2e-182 641.3 533 62.5
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 1.8e-181 639.8 520 62.7
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.3e-181 639.4 530 62.3
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.8e-181 637.9 545 60.9
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 6.8e-181 637.9 523 63.1
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 1.5e-180 636.7 524 62.2
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 4.4e-180 635.2 530 61.9
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 5.8e-180 634.8 511 64.4
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 5.8e-180 634.8 530 62.1
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 9.9e-180 634.0 503 64.0
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 1.7e-179 633.3 534 60.1
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 2.2e-179 632.9 523 62.1
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 6.4e-179 631.3 534 60.5
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 8.3e-179 630.9 443 70.4
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.4e-178 629.4 534 60.5
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 3.2e-178 629.0 447 70.2
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 6.0e-177 624.8 534 60.9
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.0e-176 624.0 516 62.0
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 2.1e-174 616.3 532 60.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 4.0e-173 612.1 530 59.8
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 2.0e-172 609.8 573 56.9
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 4.4e-172 608.6 532 59.6
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 4.4e-172 608.6 530 57.5
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 9.9e-172 607.4 527 60.9
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 9.9e-172 607.4 497 62.8
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 4.9e-171 605.1 533 59.7
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 8.4e-171 604.4 530 59.1
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 8.4e-171 604.4 573 56.4
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 2.3e-168 596.3 534 58.6
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 3.9e-168 595.5 362 85.9
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 1.5e-167 593.6 531 57.3
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.5e-167 593.6 530 57.7
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 3.3e-167 592.4 531 58.9
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 4.3e-167 592.0 616 54.1
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 2.8e-166 589.3 532 57.3
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 2.8e-166 589.3 532 57.3
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 3.6e-166 589.0 532 57.3
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 8.1e-166 587.8 521 57.8
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 1.1e-165 587.4 529 57.7
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 1.1e-165 587.4 532 57.1
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 1.1e-165 587.4 532 57.1
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 4.0e-165 585.5 528 57.6
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 1.5e-164 583.6 563 55.4
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 4.9e-163 578.6 436 66.3
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 7.1e-162 574.7 442 64.9
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 2.1e-161 573.2 496 58.9
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 3.5e-161 572.4 531 57.8
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 4.6e-161 572.0 445 67.2
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 8.7e-160 567.8 511 57.5
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 2.8e-158 562.8 501 56.3
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 4.8e-158 562.0 521 55.9
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 8.1e-158 561.2 532 54.9
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 8.1e-158 561.2 532 55.6
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.2e-156 557.4 566 54.2
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 6.4e-155 551.6 512 58.2
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 3.5e-153 545.8 493 57.4
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 6.0e-153 545.0 535 53.8
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 7.9e-153 544.7 514 55.1
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 2.4e-149 533.1 523 55.3
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 9.0e-149 531.2 558 51.6
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 1.1e-143 514.2 363 73.0
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 6.2e-142 508.4 516 53.1
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 4.0e-141 505.8 362 71.5
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 9.0e-141 504.6 441 59.2
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.1e-138 497.7 545 51.2
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 6.7e-136 488.4 406 60.6
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 1.5e-132 477.2 513 50.1
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.0e-131 474.6 549 48.5
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.6e-129 466.1 408 58.3
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 2.2e-126 456.8 511 47.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 1.8e-125 453.8 526 49.0
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 1.3e-123 447.6 518 46.5
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 8.5e-123 444.9 512 50.4
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 3.2e-122 443.0 312 69.9
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 3.6e-121 439.5 498 50.8
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 5.9e-116 422.2 506 50.4
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.1e-114 417.9 501 46.1
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.8e-112 410.6 442 50.9
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 4.8e-94 349.4 523 43.4
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 3.1e-93 346.7 445 47.4
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 2.8e-89 333.6 347 52.2
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.5e-79 301.2 232 63.4
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.6e-75 285.4 229 64.6
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 5.4e-69 266.2 330 48.5
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 8.9e-64 248.8 504 34.7
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.9e-61 241.1 229 55.5
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 1.7e-59 234.6 183 58.5
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 1.4e-53 214.9 446 35.9
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.3e-46 191.8 161 62.1
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 2.4e-37 161.0 110 67.3
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 4.3e-34 150.2 143 57.3
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 2.1e-25 121.3 67 77.6
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 2.2e-17 94.7 112 43.8
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 2.8e-17 94.4 108 53.7
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.7e-15 86.3 101 47.5
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.1e-13 82.4 43 83.7
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 2.5e-13 81.3 76 56.6
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 3.2e-13 80.9 99 42.4
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 1.8e-11 75.1 49 69.4
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 1.8e-11 75.1 46 76.1
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 5.7e-10 70.1 272 25.0
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 4.8e-09 67.0 51 62.7
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.8e-08 65.1 262 25.2
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 9.1e-08 62.8 285 26.7
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.5e-07 62.0 236 28.0
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.5e-07 62.0 300 23.7
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.5e-07 62.0 300 23.7
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.0e-07 61.6 211 28.9
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.6e-07 61.2 210 27.6
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 2.6e-07 61.2 231 26.4
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 3.4e-07 60.8 103 35.0
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 4.5e-07 60.5 228 27.6
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.5e-07 60.5 222 29.3
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 4.5e-07 60.5 199 31.7
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 4.5e-07 60.5 237 25.7
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 7.7e-07 59.7 284 24.3
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.3e-06 58.9 210 26.7
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.3e-06 58.9 215 27.9
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.2e-06 58.2 226 27.0
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 2.2e-06 58.2 215 28.4
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.8e-06 57.4 210 28.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.8e-06 57.4 210 28.6
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.8e-06 57.4 222 28.8
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 5.0e-06 57.0 228 27.2
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 5.0e-06 57.0 227 26.4
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 5.0e-06 57.0 103 32.0
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 6.5e-06 56.6 210 28.6
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 6.5e-06 56.6 231 28.1
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 6.5e-06 56.6 214 27.6
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 8.5e-06 56.2 210 27.6
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 8.5e-06 56.2 216 27.3
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.5e-06 56.2 155 31.0
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 8.5e-06 56.2 205 26.8
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 8.5e-06 56.2 263 28.1
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 8.5e-06 56.2 210 27.6


User provided reference genes

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