Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 0.0e+00 1470.7 779 100.0
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 0.0e+00 1235.7 816 82.2
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 0.0e+00 1201.8 816 79.9
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 0.0e+00 1198.7 816 79.8
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 0.0e+00 1189.1 832 79.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 0.0e+00 1160.2 837 76.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 5.4e-246 854.7 828 61.1
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.7e-245 852.4 828 58.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.5e-235 819.3 835 58.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.3e-233 812.8 804 59.0
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.2e-232 810.4 804 58.5
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.8e-225 786.6 429 93.2
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.2e-224 783.9 831 56.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 4.4e-224 781.9 806 54.5
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.2e-223 779.6 833 53.9
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.4e-222 776.9 815 54.0
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.6e-221 773.5 818 55.3
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 4.6e-221 771.9 845 53.7
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.0e-220 770.8 815 54.2
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.3e-220 769.6 814 55.5
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.3e-219 765.8 838 54.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.1e-218 763.1 818 54.0
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.1e-218 763.1 885 54.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 2.8e-218 762.7 790 57.2
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.7e-218 761.9 819 55.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 8.1e-218 761.1 818 54.2
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.3e-217 759.6 810 55.2
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.0e-217 758.8 818 54.0
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 3.4e-216 755.7 817 54.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.4e-216 755.7 883 53.9
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.9e-215 751.9 816 53.4
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 8.4e-215 751.1 824 55.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.1e-214 748.8 816 53.7
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 4.1e-214 748.8 817 53.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.2e-214 747.7 816 52.9
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 9.2e-214 747.7 817 53.6
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.1e-213 746.5 822 54.5
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.0e-212 744.2 803 53.9
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.7e-212 743.4 816 54.2
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 2.3e-212 743.0 815 54.0
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.1e-212 741.9 813 53.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 2.5e-211 739.6 783 55.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.1e-210 736.5 789 54.2
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.6e-210 735.7 854 51.5
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.4e-209 733.0 854 51.4
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 5.4e-206 721.8 819 53.4
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 4.6e-205 718.8 801 54.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.0e-204 717.6 812 51.7
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.3e-204 717.2 832 50.5
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.3e-204 717.2 825 52.7
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.7e-204 716.8 815 51.3
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.3e-204 716.5 818 52.4
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 8.7e-204 714.5 810 51.2
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 6.2e-202 708.4 831 51.3
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 6.2e-202 708.4 802 53.0
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 6.2e-202 708.4 805 51.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.8e-201 706.8 760 54.1
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 4.0e-201 705.7 812 53.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.2e-199 699.9 799 51.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-198 697.6 809 51.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 6.6e-196 688.3 824 50.4
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 7.3e-195 684.9 802 51.9
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 4.0e-193 679.1 815 49.4
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.6e-192 676.4 810 50.7
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.9e-191 672.9 805 51.1
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 6.4e-191 671.8 812 49.9
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.1e-190 671.0 834 49.4
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.9e-190 670.2 815 50.3
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 3.5e-189 666.0 806 50.1
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 2.3e-188 663.3 812 49.1
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.0e-188 662.9 807 49.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.5e-187 659.8 664 55.3
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-185 654.1 770 51.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 5.3e-185 652.1 797 49.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.6e-184 648.3 807 49.7
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 6.5e-183 645.2 787 50.6
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-182 644.0 691 53.7
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 3.5e-181 639.4 793 48.9
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.6e-181 639.0 806 49.0
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 6.0e-181 638.6 800 49.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 3.0e-180 636.3 802 48.4
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 6.7e-180 635.2 806 48.8
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 8.7e-180 634.8 803 47.4
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.5e-179 634.0 616 56.5
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.9e-179 633.6 815 48.1
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 3.3e-179 632.9 819 47.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 4.3e-179 632.5 798 48.1
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 7.4e-179 631.7 600 57.3
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 9.6e-179 631.3 811 48.5
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.1e-178 630.2 877 46.2
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.8e-177 627.1 728 52.7
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.4e-177 626.7 798 48.5
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.1e-177 626.3 797 48.9
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 6.9e-177 625.2 795 49.1
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 6.9e-177 625.2 794 48.4
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.2e-176 624.4 793 48.8
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.5e-176 624.0 798 48.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 6.5e-175 618.6 795 48.7
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.9e-174 617.1 795 48.3
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 7.2e-174 615.1 792 49.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 6.1e-173 612.1 631 53.7
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 2.3e-172 610.1 796 48.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 3.9e-172 609.4 796 49.0
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.3e-170 604.4 803 47.2
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.6e-170 604.0 795 47.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 6.3e-170 602.1 798 46.6
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 6.3e-170 602.1 773 48.4
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 5.3e-169 599.0 790 46.7
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.0e-164 583.2 794 47.5
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.4e-161 573.5 782 47.3
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.6e-157 559.7 409 82.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.0e-155 553.9 668 49.3
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.3e-154 551.2 760 46.2
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.8e-145 520.8 856 40.9
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.6e-144 517.7 782 44.8
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 5.2e-140 502.7 643 47.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.5e-139 501.1 876 38.9
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 5.4e-137 492.7 848 41.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.5e-134 484.6 454 57.5
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 5.7e-131 472.6 795 40.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.8e-127 459.9 461 52.5
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 7.3e-102 375.9 745 36.4
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.2e-97 359.0 315 59.7
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.6e-96 356.7 465 44.7
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.8e-96 355.9 739 36.0
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-84 318.9 488 40.4
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.3e-84 316.6 482 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 5.8e-83 313.2 508 39.2
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.0e-80 303.1 480 38.3
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.2e-74 284.6 430 39.3
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 8.4e-74 282.7 368 49.7
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.4e-73 281.2 467 38.5
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.6e-72 276.9 472 38.8
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-70 271.2 485 35.7
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-70 271.2 485 35.7
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-67 261.9 483 35.8
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.0e-64 250.0 551 39.2
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.0e-55 222.6 196 53.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.1e-48 198.4 673 33.0
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-44 186.0 195 55.9
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.9e-40 169.9 424 39.9
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 6.3e-29 133.7 92 65.2
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 1.1e-17 96.3 71 63.4
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.0e-16 90.1 206 33.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.8e-15 89.0 107 43.0
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.2e-11 76.3 82 54.9
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 3.3e-09 68.2 53 54.7
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 2.1e-08 65.5 66 45.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.1e-08 65.5 66 45.5
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-07 62.8 53 49.1
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-07 62.8 49 59.2
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 3.0e-07 61.6 93 39.8
unitig_61.g26414 Utricularia gibba HOM05D000584 ORTHO05D000458 3.0e-07 61.6 146 32.9
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.8e-06 56.6 53 45.3


User provided reference genes

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