Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 6.3e-129 464.2 242 100.0
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.5e-122 443.0 242 94.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.4e-122 441.8 242 93.8
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 4.4e-122 441.4 242 94.6
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 5.7e-122 441.0 242 94.2
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 9.8e-122 440.3 242 94.2
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 3.7e-121 438.3 242 94.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.8e-120 436.0 242 93.4
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-112 409.1 242 86.4
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.2e-112 408.7 242 85.5
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 7.0e-112 407.5 242 86.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 9.2e-112 407.1 242 87.2
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.2e-111 406.8 242 86.0
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.0e-111 406.0 242 86.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 6.0e-111 404.4 242 86.8
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.0e-110 403.7 242 85.1
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.0e-110 403.7 242 86.4
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.7e-110 402.9 242 85.5
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.3e-110 402.5 242 85.5
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.3e-110 402.5 242 86.0
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.1e-109 400.2 242 85.1
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.5e-109 399.8 242 84.7
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.9e-109 399.4 242 83.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.9e-109 399.4 242 83.9
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.9e-109 399.4 242 85.5
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.5e-109 399.1 241 84.6
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.5e-109 399.1 242 84.3
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 3.3e-109 398.7 242 83.9
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.3e-109 398.3 242 84.3
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.3e-109 398.3 242 85.1
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 5.6e-109 397.9 242 83.5
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 5.6e-109 397.9 242 83.9
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 9.5e-109 397.1 242 83.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 1.2e-108 396.7 242 83.5
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.2e-108 396.7 242 83.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.6e-108 396.4 241 83.4
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.6e-108 395.2 242 82.6
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 3.6e-108 395.2 242 83.5
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 3.6e-108 395.2 242 83.5
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 4.7e-108 394.8 242 84.3
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 6.2e-108 394.4 242 83.1
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 6.2e-108 394.4 260 79.2
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 8.0e-108 394.0 242 83.1
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.4e-107 393.3 249 82.7
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.4e-107 393.3 242 83.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.4e-107 393.3 242 83.1
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.4e-107 393.3 242 83.9
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.8e-107 392.9 242 83.1
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.8e-107 392.9 242 83.1
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.3e-107 392.5 242 82.6
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 3.1e-107 392.1 242 82.6
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 3.1e-107 392.1 242 82.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.1e-107 392.1 242 82.6
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.1e-107 392.1 242 82.6
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 4.0e-107 391.7 242 83.1
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 4.0e-107 391.7 242 82.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 4.0e-107 391.7 242 82.6
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 5.2e-107 391.3 242 83.5
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 6.8e-107 391.0 242 82.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 8.9e-107 390.6 242 81.8
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.2e-106 390.2 242 82.2
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.5e-106 389.8 242 81.8
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 2.0e-106 389.4 242 82.2
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 2.6e-106 389.0 242 81.8
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 4.4e-106 388.3 242 83.1
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.8e-106 387.9 249 81.5
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 9.8e-106 387.1 242 81.8
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 9.8e-106 387.1 242 81.8
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.3e-105 386.7 242 82.2
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 2.2e-105 386.0 242 81.8
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.7e-105 385.2 242 81.4
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 6.4e-105 384.4 242 81.4
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 6.4e-105 384.4 242 81.4
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.4e-104 383.3 240 81.7
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 9.2e-104 380.6 267 76.0
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.3e-102 375.9 242 78.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 8.6e-102 374.0 242 78.5
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.5e-101 373.2 242 77.7
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 7.3e-101 370.9 284 71.5
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.8e-100 369.0 276 71.4
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 3.6e-100 368.6 303 67.7
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.9e-97 359.0 238 79.0
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 4.1e-96 355.1 209 85.2
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 4.6e-95 351.7 242 71.9
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.0e-94 349.0 209 83.3
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 3.9e-94 348.6 219 82.6
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.6e-92 342.0 209 83.7
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.6e-92 342.0 242 75.2
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.5e-90 336.7 242 74.8
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 7.1e-88 327.8 242 74.0
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.2e-87 327.0 196 84.2
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.6e-87 326.6 242 72.3
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.6e-86 321.2 296 62.8
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.9e-85 319.7 241 69.3
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 6.9e-83 311.2 227 68.3
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 5.8e-82 308.1 187 80.7
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 9.9e-82 307.4 210 73.8
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 3.8e-81 305.4 241 67.6
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 4.9e-81 305.1 202 76.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.4e-80 303.5 192 81.8
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.4e-80 302.8 188 81.4
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.2e-80 302.4 242 69.0
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.2e-80 302.0 216 69.4
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 7.1e-80 301.2 189 81.0
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.7e-79 299.3 187 80.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 5.3e-75 285.0 220 67.3
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 7.1e-72 274.6 242 62.4
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 6.0e-71 271.6 167 83.8
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 6.7e-70 268.1 251 60.6
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 5.6e-69 265.0 232 62.5
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.8e-62 243.4 240 56.2
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.5e-61 240.4 235 56.2
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 6.3e-52 208.4 160 67.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.1e-51 207.6 129 79.8
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.4e-46 190.7 129 75.2
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 4.3e-45 185.7 240 50.0
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 1.0e-33 147.9 156 57.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.2e-30 135.6 227 36.6
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 6.7e-30 135.2 93 73.1
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.2e-28 130.2 84 72.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.7e-28 129.4 101 69.3
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.6e-26 124.0 119 53.8
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.0e-26 123.6 242 37.6
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.0e-25 121.3 81 76.5
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 6.5e-25 118.6 193 40.4
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 9.4e-24 114.8 113 58.4
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.0e-21 107.1 121 55.4
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.0e-18 97.1 59 86.4
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.7e-18 96.7 70 70.0
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.7e-17 94.0 88 60.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.2e-15 87.8 61 75.4
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.2e-13 81.3 55 67.3
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.2e-13 81.3 49 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.0e-10 70.5 51 62.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.6e-09 65.5 51 60.8
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 8.9e-06 55.1 34 76.5


User provided reference genes

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