Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.3e-300 1033.9 515 100.0
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 7.6e-265 916.8 649 75.3
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 3.8e-248 861.3 518 85.5
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.1e-234 816.6 602 73.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 5.7e-220 767.7 567 73.0
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.5e-180 636.7 612 57.7
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.6e-180 636.0 611 58.6
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.8e-180 634.8 611 58.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.0e-176 622.5 604 58.8
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.4e-170 602.8 600 58.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.7e-168 596.7 617 56.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 8.6e-168 594.3 618 56.5
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.6e-164 582.8 615 53.8
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.3e-160 569.7 598 53.2
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 3.0e-160 569.3 615 52.7
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.0e-160 569.3 615 53.0
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 8.7e-160 567.8 615 53.2
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.8e-158 562.8 730 48.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 4.7e-158 562.0 615 55.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.0e-157 558.9 608 52.5
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.5e-156 557.0 642 50.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.6e-156 554.7 613 52.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 4.9e-155 552.0 614 52.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 6.4e-155 551.6 609 53.9
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 7.1e-154 548.1 559 56.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 2.1e-153 546.6 603 51.6
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.7e-153 546.2 616 51.3
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.5e-153 545.8 624 52.1
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.3e-152 543.1 619 53.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.3e-152 543.1 614 50.5
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 4.3e-151 538.9 615 51.9
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 4.3e-151 538.9 615 51.9
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 4.3e-151 538.9 595 53.4
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 9.6e-151 537.7 603 50.6
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.3e-150 537.3 640 50.3
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.4e-149 533.1 614 50.0
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.4e-148 529.3 624 49.0
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 5.8e-148 528.5 597 52.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.9e-147 525.4 597 52.1
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.4e-146 523.1 606 50.8
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.2e-146 522.7 609 51.2
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 4.2e-146 522.3 614 50.0
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.2e-145 520.8 613 51.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.6e-145 520.4 614 48.7
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.6e-145 520.4 611 50.6
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.6e-145 520.4 612 50.8
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 2.1e-145 520.0 549 53.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.9e-144 515.8 611 49.4
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.9e-144 515.8 578 52.6
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 6.7e-144 515.0 601 51.2
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 8.7e-144 514.6 615 48.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.5e-143 513.8 629 51.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 7.4e-143 511.5 613 51.1
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.1e-142 510.0 613 49.9
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 9.0e-141 504.6 665 46.8
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 9.0e-141 504.6 465 61.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 4.5e-140 502.3 602 50.5
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 2.1e-137 493.4 615 49.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 3.5e-137 492.7 616 47.7
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.0e-136 491.1 616 47.6
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.8e-136 490.3 622 48.1
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 2.3e-136 490.0 604 49.8
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 3.0e-136 489.6 581 49.4
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.9e-135 486.9 595 48.9
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.6e-129 467.2 531 52.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-129 467.2 493 55.8
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 6.1e-129 465.3 609 47.1
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-128 463.8 574 48.3
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.8e-128 463.8 555 48.6
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 3.7e-126 456.1 348 69.3
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.8e-126 455.7 521 52.0
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 5.3e-125 452.2 558 48.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-123 447.6 611 46.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 3.8e-123 446.0 489 52.4
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 8.5e-123 444.9 580 49.3
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 3.2e-122 443.0 600 45.5
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.6e-121 439.1 537 49.7
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 6.7e-120 435.3 617 45.2
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 4.3e-119 432.6 615 44.7
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.7e-119 431.4 610 45.4
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.0e-116 423.7 475 52.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 5.9e-116 422.2 617 44.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 7.7e-116 421.8 528 48.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-115 421.0 524 48.7
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-114 417.9 522 48.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.1e-114 417.9 522 48.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 5.5e-114 415.6 607 43.8
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 9.4e-114 414.8 621 43.6
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.6e-113 412.9 539 47.7
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 4.7e-113 412.5 595 44.2
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.0e-112 411.4 605 43.3
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.8e-112 410.6 478 52.1
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 5.1e-112 409.1 600 43.8
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.5e-111 407.5 598 44.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-111 407.5 598 44.1
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 4.4e-111 406.0 598 44.0
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 6.3e-110 402.1 595 43.7
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 6.3e-110 402.1 595 43.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.1e-109 401.4 408 57.1
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.1e-109 401.4 351 62.1
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.5e-100 369.8 376 57.2
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.0e-99 368.2 632 40.3
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.5e-98 362.5 637 39.6
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.2e-95 354.8 608 39.3
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 9.1e-93 345.1 564 40.8
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.6e-92 344.4 266 64.7
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.2e-87 328.2 444 45.9
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.5e-87 327.8 615 38.5
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.1e-85 321.6 318 60.1
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.5e-82 311.2 468 44.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 3.9e-59 233.4 329 45.6
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.6e-57 228.0 211 57.3
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.6e-55 220.7 418 38.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.7e-54 218.0 247 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.4e-53 214.2 168 65.5
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 9.6e-50 202.2 164 62.8
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 3.6e-49 200.3 284 44.7
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.1e-48 198.7 344 37.2
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.1e-37 162.2 170 55.3
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-35 155.2 268 38.1
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.8e-33 147.5 83 81.9
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.2e-33 146.4 90 73.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 9.3e-29 132.5 242 38.0
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.1e-28 131.3 272 38.2
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.0e-27 127.5 119 53.8
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.5e-26 124.4 87 75.9
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 9.6e-26 122.5 316 36.7
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.8e-19 101.7 69 78.3
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.8e-19 101.7 115 52.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 5.1e-19 100.1 65 83.1
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-17 95.5 149 36.9
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-17 95.1 58 75.9
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-14 85.5 108 38.9
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.3e-14 85.5 108 38.9
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-14 85.1 63 63.5
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.7e-14 85.1 128 38.3
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 6.5e-14 83.2 102 52.9
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.1e-12 78.2 53 73.6
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 3.0e-11 74.3 53 64.2
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 1.6e-09 68.6 103 40.8
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 6.9e-08 63.2 148 28.4
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 5.9e-07 60.1 50 64.0
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.3e-06 58.9 147 30.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 2.9e-06 57.8 50 56.0
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.9e-06 57.8 44 68.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 8.5e-06 56.2 35 68.6


User provided reference genes

Program Settings