Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-124 449.1 226 100.0
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.1e-102 374.0 206 93.2
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-79 299.3 210 77.6
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-77 293.9 210 76.2
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 6.0e-73 278.1 211 73.5
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 5.1e-72 275.0 209 72.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.1e-71 273.9 209 72.2
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.3e-71 272.3 209 72.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 7.9e-65 251.1 210 67.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.0e-64 250.8 212 67.5
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 3.9e-64 248.8 212 67.5
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 5.1e-64 248.4 212 67.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.2e-59 233.0 211 62.6
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.8e-53 213.4 211 55.0
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.3e-51 207.2 166 64.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.2e-51 206.5 193 57.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.9e-51 206.1 171 61.4
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 3.8e-51 205.7 176 61.4
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 5.0e-51 205.3 134 73.1
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.5e-51 204.9 170 64.1
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.4e-51 204.5 170 64.1
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.9e-50 203.4 131 74.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 4.2e-50 202.2 173 61.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.5e-50 201.8 208 53.4
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.2e-50 201.4 187 57.8
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 9.3e-50 201.1 170 60.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 9.3e-50 201.1 170 60.6
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 9.3e-50 201.1 212 53.3
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 9.3e-50 201.1 134 71.6
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.2e-49 200.7 192 55.7
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.2e-49 200.7 138 70.3
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-49 200.7 208 53.4
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-49 200.7 208 53.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.2e-49 200.7 163 60.7
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.1e-49 199.9 134 70.9
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.1e-49 199.9 134 70.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.1e-49 199.9 212 52.8
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.1e-49 199.9 134 70.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 3.5e-49 199.1 142 66.9
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 3.5e-49 199.1 208 54.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.5e-49 199.1 187 57.8
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.1e-49 198.4 180 57.8
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.9e-49 198.0 190 54.2
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 7.9e-49 198.0 134 70.1
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 7.9e-49 198.0 183 59.0
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.3e-48 197.2 134 68.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.3e-48 197.2 192 55.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.3e-48 197.2 142 67.6
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.3e-48 197.2 142 67.6
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.3e-48 197.2 173 60.1
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.3e-48 197.2 172 61.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.3e-48 197.2 167 61.1
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.8e-48 196.8 142 66.2
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.8e-48 196.8 134 70.9
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.8e-48 196.8 162 62.3
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.3e-48 196.4 160 60.0
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.3e-48 196.4 188 63.3
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 3.0e-48 196.1 142 68.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.9e-48 195.7 180 59.4
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.9e-48 195.7 142 67.6
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.9e-48 195.7 134 70.9
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.1e-48 195.3 134 67.9
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 5.1e-48 195.3 134 70.1
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.1e-48 195.3 161 62.1
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 8.7e-48 194.5 176 56.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.1e-47 194.1 162 59.9
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-47 194.1 131 73.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.5e-47 193.7 187 54.5
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.5e-47 193.7 196 55.6
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.5e-47 193.7 142 65.5
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.9e-47 193.4 162 61.1
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 2.5e-47 193.0 195 54.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.5e-47 193.0 134 67.9
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.5e-47 193.0 207 53.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.5e-47 193.0 182 54.4
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.3e-47 192.6 132 68.9
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.3e-47 192.6 170 55.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 4.3e-47 192.2 170 55.9
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 4.3e-47 192.2 170 55.9
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 4.3e-47 192.2 166 58.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 5.7e-47 191.8 188 52.1
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 7.4e-47 191.4 166 58.4
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 7.4e-47 191.4 197 52.3
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.4e-47 191.4 205 54.6
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 7.4e-47 191.4 183 57.4
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.4e-47 191.4 160 60.0
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 9.7e-47 191.0 183 53.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 9.7e-47 191.0 164 56.7
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 9.7e-47 191.0 164 56.7
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.7e-47 191.0 193 54.4
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 9.7e-47 191.0 190 54.2
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.6e-46 190.3 163 57.1
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.6e-46 190.3 187 54.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.6e-46 190.3 162 60.5
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.2e-46 189.9 176 56.2
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.2e-46 189.9 186 54.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.2e-46 189.9 160 58.1
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 3.7e-46 189.1 187 52.9
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 3.7e-46 189.1 182 53.3
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.1e-45 187.6 187 53.5
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.4e-45 187.2 182 53.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.4e-45 187.2 125 71.2
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.4e-45 187.2 161 60.9
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.8e-45 186.8 166 59.0
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.4e-45 186.4 195 51.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.4e-45 186.4 170 55.9
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 4.1e-45 185.7 131 68.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 6.9e-45 184.9 213 49.8
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.5e-44 183.7 138 64.5
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 7.7e-44 181.4 209 51.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.0e-43 181.0 195 52.3
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.3e-43 180.6 134 64.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 2.9e-43 179.5 134 63.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 5.0e-43 178.7 192 51.0
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.0e-43 178.7 182 52.7
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 8.5e-43 177.9 185 50.3
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 8.5e-43 177.9 180 54.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 2.1e-41 173.3 115 71.3
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 4.6e-41 172.2 112 72.3
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 6.1e-41 171.8 159 57.2
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 6.1e-41 171.8 129 64.3
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 7.9e-41 171.4 112 71.4
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.0e-40 171.0 129 66.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.8e-40 170.2 130 58.5
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.1e-39 167.5 129 62.8
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.5e-39 167.2 112 70.5
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.5e-39 166.4 149 59.1
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.5e-39 166.4 113 67.3
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 2.5e-39 166.4 187 54.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.3e-39 166.0 138 60.1
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 5.7e-39 165.2 209 47.4
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.7e-38 163.7 112 67.9
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.2e-38 163.3 129 58.1
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 6.3e-38 161.8 112 66.1
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.3e-38 161.8 191 48.2
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-37 161.0 184 48.4
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.4e-37 160.6 171 53.2
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 3.1e-37 159.5 129 56.6
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 6.9e-37 158.3 170 54.1
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.2e-35 153.3 125 58.4
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.4e-34 147.9 112 64.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.1e-33 145.2 129 54.3
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.5e-28 129.4 77 79.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.7e-28 128.3 189 42.9
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.7e-27 127.1 74 77.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.9e-27 126.3 80 67.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.8e-27 125.9 80 71.2
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 6.5e-27 125.2 80 72.5
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.9e-26 123.6 95 62.1
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.5e-26 123.2 157 47.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-25 120.9 118 50.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.7e-25 119.0 156 47.4
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-24 117.9 115 57.4
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.3e-22 110.9 125 42.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.9e-18 97.1 70 67.1
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 5.5e-18 95.5 102 50.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-16 90.1 100 48.0
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 5.2e-16 89.0 51 80.4
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 6.8e-16 88.6 126 40.5
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 4.1e-13 79.3 57 64.9
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.0e-12 77.0 70 51.4
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-11 74.3 42 81.0
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-11 73.9 42 78.6
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-11 73.6 52 65.4
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-09 65.9 89 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 8.3e-06 55.1 45 64.4


User provided reference genes

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