Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.3e-58 229.6 118 100.0
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 2.6e-27 125.6 78 83.3
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.6e-27 125.6 76 81.6
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.2e-19 100.1 77 68.8
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.9e-17 92.8 102 52.0
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 5.4e-17 91.3 79 59.5
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.2e-16 90.1 79 58.2
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.7e-16 89.0 72 66.7
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 3.5e-16 88.6 88 59.1
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 3.5e-16 88.6 70 67.1
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 3.5e-16 88.6 80 58.8
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 1.3e-15 86.7 86 54.7
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 1.3e-15 86.7 86 54.7
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.8e-15 86.3 72 61.1
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 1.8e-15 86.3 79 55.7
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 8.7e-15 84.0 87 56.3
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.1e-14 83.6 79 54.4
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.1e-14 83.6 76 64.5
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 1.1e-14 83.6 76 64.5
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.1e-14 83.6 86 58.1
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.5e-14 82.4 86 57.0
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 3.3e-14 82.0 86 58.1
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 7.4e-14 80.9 84 50.0
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 9.6e-14 80.5 79 53.2
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.3e-13 80.1 90 50.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.6e-13 79.7 96 53.1
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.6e-13 79.7 90 51.1
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.6e-13 79.7 67 61.2
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.1e-13 79.3 87 50.6
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 3.7e-13 78.6 74 60.8
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 3.7e-13 78.6 80 51.2
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.7e-13 78.6 91 49.5
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.8e-13 78.2 77 57.1
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 4.8e-13 78.2 77 57.1
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 4.8e-13 78.2 72 58.3
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 6.2e-13 77.8 91 50.5
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 6.2e-13 77.8 91 50.5
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 6.2e-13 77.8 80 55.0
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.1e-13 77.4 71 62.0
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.8e-12 76.3 79 57.0
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.8e-12 76.3 79 57.0
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.4e-12 75.9 72 61.1
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 4.0e-12 75.1 89 53.9
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.3e-12 74.7 72 61.1
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 6.9e-12 74.3 73 57.5
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 6.9e-12 74.3 82 54.9
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 9.0e-12 73.9 78 53.8
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.5e-11 73.2 74 54.1
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 5.8e-11 71.2 78 50.0
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 7.6e-11 70.9 83 54.2
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 9.9e-11 70.5 91 50.5
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 9.9e-11 70.5 68 57.4
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.7e-10 69.7 79 55.7
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.7e-10 69.7 79 49.4
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.2e-10 69.3 81 48.1
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.8e-10 68.6 82 52.4
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 3.8e-10 68.6 90 44.4
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 3.8e-10 68.6 68 55.9
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 1.4e-09 66.6 73 46.6
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 3.2e-09 65.5 48 60.4
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.2e-09 65.5 80 48.8
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.2e-09 65.1 80 43.8
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 1.2e-08 63.5 72 56.9
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.2e-08 63.5 84 47.6
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 2.1e-08 62.8 88 44.3
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 2.1e-08 62.8 46 60.9
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 2.7e-08 62.4 53 62.3
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 3.5e-08 62.0 49 63.3
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 4.6e-08 61.6 48 60.4
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.6e-08 61.6 79 46.8
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 6.0e-08 61.2 82 52.4
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 6.0e-08 61.2 81 48.1
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 6.0e-08 61.2 79 45.6
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 1.8e-07 59.7 80 48.8
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.8e-07 59.7 72 51.4
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 2.3e-07 59.3 67 52.2
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 3.0e-07 58.9 48 66.7
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 3.9e-07 58.5 83 48.2
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 3.9e-07 58.5 78 47.4
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 3.9e-07 58.5 80 47.5
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 5.1e-07 58.2 86 51.2
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 5.1e-07 58.2 79 41.8
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 5.1e-07 58.2 81 48.1
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 8.7e-07 57.4 89 44.9
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 1.1e-06 57.0 84 50.0
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.5e-06 56.6 79 41.8
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 2.5e-06 55.8 79 40.5
A10p33500 Brassica napus HOM05D009057 ORTHO05D011698 5.6e-06 54.7 83 48.2
CARHR211270 Cardamine hirsuta HOM05D009057 ORTHO05D011698 5.6e-06 54.7 83 47.0
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 7.4e-06 54.3 58 55.2
BraA10t45380Z Brassica rapa HOM05D009057 ORTHO05D011698 7.4e-06 54.3 83 47.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 7.4e-06 54.3 80 47.5
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 9.6e-06 53.9 73 46.6


User provided reference genes

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