Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.4e-175 617.8 308 100.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.2e-166 587.0 311 94.5
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.1e-157 560.1 312 90.1
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 2.9e-155 552.0 311 91.0
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.5e-154 549.7 309 90.6
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 7.2e-154 547.4 309 90.0
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.7e-150 536.2 309 89.0
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.6e-143 512.3 309 82.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 4.6e-140 501.5 307 81.8
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.2e-137 493.4 314 77.7
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 4.0e-136 488.4 306 80.4
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 3.4e-135 485.3 309 79.3
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.5e-135 484.2 307 77.5
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.9e-134 481.5 279 84.9
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.9e-134 481.5 305 79.3
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 6.4e-134 481.1 267 88.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.1e-133 480.3 313 78.6
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.9e-133 479.6 306 79.1
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.2e-133 478.8 301 78.1
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 4.1e-133 478.4 307 80.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 4.1e-133 478.4 307 79.2
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 7.0e-133 477.6 310 77.4
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.0e-133 477.6 265 87.2
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.2e-132 476.9 279 84.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.0e-132 476.1 267 86.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 4.6e-132 474.9 309 77.3
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.0e-131 473.8 307 78.5
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.0e-131 473.8 286 82.2
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.3e-131 473.4 304 78.3
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.7e-131 473.0 279 82.1
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 3.0e-131 472.2 282 82.6
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 3.0e-131 472.2 267 85.4
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.0e-131 472.2 308 76.9
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.9e-131 471.9 308 76.9
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 5.0e-131 471.5 313 74.4
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 6.6e-131 471.1 280 82.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 6.6e-131 471.1 271 83.8
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 8.6e-131 470.7 304 79.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 8.6e-131 470.7 310 77.1
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.1e-130 470.3 308 77.3
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.9e-130 469.5 308 76.9
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 2.5e-130 469.2 304 77.6
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.5e-130 469.2 279 81.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.3e-130 468.8 278 81.7
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 4.3e-130 468.4 304 77.6
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 7.3e-130 467.6 307 77.2
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.1e-129 466.1 255 88.2
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.8e-129 465.7 298 77.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.8e-129 465.7 298 77.5
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 3.6e-129 465.3 277 83.0
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.4e-128 463.4 264 84.1
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.4e-128 463.4 275 81.5
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.4e-128 463.4 278 81.7
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.8e-128 463.0 277 82.7
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 4.0e-128 461.8 288 79.9
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 5.2e-128 461.5 304 76.3
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 5.2e-128 461.5 267 83.5
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 6.8e-128 461.1 277 82.3
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 6.8e-128 461.1 299 77.3
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 8.9e-128 460.7 254 88.6
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 8.9e-128 460.7 309 74.8
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.2e-127 460.3 312 75.3
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.2e-127 460.3 307 75.2
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 2.6e-127 459.1 277 81.6
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 4.4e-127 458.4 277 81.6
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 4.4e-127 458.4 308 75.6
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.8e-127 458.0 262 84.0
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 9.9e-127 457.2 307 73.9
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.3e-126 456.8 287 79.4
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 6.4e-126 454.5 269 83.3
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.4e-125 453.4 277 81.2
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.2e-124 450.3 311 74.6
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.5e-124 448.7 243 89.3
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.5e-124 448.7 243 89.3
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 4.6e-124 448.4 280 77.5
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 3.9e-123 445.3 301 74.1
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 5.1e-123 444.9 301 74.1
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.1e-122 443.7 243 88.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.2e-121 440.3 306 71.9
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.2e-121 440.3 281 76.2
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 2.1e-121 439.5 273 78.0
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.7e-121 438.3 280 77.5
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.2e-121 438.0 288 75.0
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.1e-120 437.2 282 76.2
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.4e-120 436.8 278 76.6
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.8e-120 436.4 316 70.6
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 3.1e-120 435.6 301 73.1
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 4.0e-120 435.3 243 86.4
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 6.8e-120 434.5 278 76.3
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.5e-119 433.3 289 73.7
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.6e-119 432.6 280 77.1
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.9e-119 430.6 263 77.9
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.7e-118 429.9 283 74.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.2e-117 425.6 269 78.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.7e-115 419.9 319 69.3
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 5.2e-112 408.3 284 72.5
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.5e-106 390.2 268 69.8
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 4.8e-105 385.2 219 87.2
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 9.3e-101 370.9 259 68.3
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.2e-100 370.5 283 68.9
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 6.0e-100 368.2 272 66.9
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 6.7e-99 364.8 278 62.2
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 5.6e-98 361.7 192 90.6
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.1e-96 357.5 269 65.1
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.5e-95 353.6 190 90.0
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 7.6e-95 351.3 243 76.1
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 9.9e-95 350.9 254 72.4
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 6.4e-94 348.2 192 85.4
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 3.2e-93 345.9 192 84.9
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.6e-92 343.6 190 86.8
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.5e-90 337.0 304 57.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.2e-86 323.2 263 61.2
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.3e-83 313.2 240 65.4
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 5.1e-83 312.0 173 87.3
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.5e-82 309.7 256 61.3
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 6.3e-81 305.1 243 61.7
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 5.0e-78 295.4 187 78.1
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.7e-73 280.4 209 71.3
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.3e-67 260.0 256 53.5
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.1e-61 241.1 188 66.0
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.5e-61 240.0 255 55.7
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 4.4e-58 229.2 144 78.5
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 8.6e-38 161.8 135 63.0
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 3.3e-37 159.8 85 88.2
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 3.5e-31 139.8 276 36.2
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 4.3e-21 106.3 63 73.0
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 5.6e-21 105.9 315 28.3
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 9.5e-21 105.1 65 76.9
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.6e-18 97.1 274 31.8
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.1e-15 87.4 70 64.3
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 1.0e-14 85.1 104 53.8
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 8.6e-06 55.5 71 45.1


User provided reference genes

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