Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.8e-97 357.8 181 100.0
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-88 330.1 181 94.5
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 3.9e-75 285.0 187 80.7
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 3.9e-75 285.0 181 83.4
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.1e-74 283.5 183 81.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 7.7e-71 270.8 198 73.7
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 4.7e-68 261.5 181 77.9
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.2e-60 236.9 177 72.3
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 2.7e-60 235.7 182 70.9
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 8.0e-60 234.2 175 69.7
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.4e-59 233.4 178 70.2
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.1e-56 223.8 181 65.7
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 7.0e-56 221.1 181 66.9
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.2e-55 220.3 184 63.6
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.6e-55 219.9 181 62.4
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 5.0e-54 214.9 182 64.3
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.5e-54 214.5 122 90.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.1e-53 213.8 179 63.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.5e-53 213.4 181 62.4
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.9e-53 213.0 181 64.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.9e-53 213.0 181 62.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.5e-53 212.6 184 62.5
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 3.2e-53 212.2 184 62.5
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.2e-53 212.2 184 62.5
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 4.2e-53 211.8 181 63.0
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.5e-53 211.5 184 62.5
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 9.4e-53 210.7 177 62.1
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-52 210.3 181 63.5
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.7e-52 209.1 186 60.8
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 6.1e-52 208.0 181 61.3
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.4e-51 206.8 155 65.8
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 3.0e-51 205.7 180 61.1
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 3.0e-51 205.7 185 61.6
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 6.8e-51 204.5 182 60.4
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 8.8e-51 204.1 175 60.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 8.8e-51 204.1 174 60.3
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 3.4e-50 202.2 174 63.2
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.4e-50 202.2 181 62.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.4e-50 201.8 166 65.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 5.7e-50 201.4 174 60.3
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 9.8e-50 200.7 181 61.3
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 9.8e-50 200.7 174 60.3
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.3e-49 200.3 181 60.2
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.7e-49 199.9 173 60.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.2e-49 199.5 177 62.7
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.8e-49 199.1 152 63.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 6.3e-49 198.0 182 59.9
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.3e-49 197.6 185 57.8
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.8e-48 196.4 176 58.0
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.8e-48 196.4 176 58.0
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.8e-48 196.4 177 57.1
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 2.4e-48 196.1 173 59.0
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 3.1e-48 195.7 151 64.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 1.6e-47 193.4 173 57.2
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.0e-47 193.0 181 58.0
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 4.5e-47 191.8 174 56.9
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 7.7e-47 191.0 181 59.1
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.3e-46 189.5 181 55.2
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 6.6e-46 188.0 184 56.0
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 6.6e-46 188.0 188 56.9
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 8.6e-46 187.6 182 58.2
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.5e-45 186.8 186 57.0
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.5e-45 186.8 182 57.1
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.5e-45 186.0 246 45.1
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 3.3e-45 185.7 179 58.1
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 3.3e-45 185.7 181 55.8
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.2e-45 185.3 176 56.8
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 4.2e-45 185.3 162 60.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 9.5e-45 184.1 176 57.4
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.2e-44 183.7 176 55.1
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 4.7e-44 181.8 176 57.4
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 4.7e-44 181.8 235 48.9
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.0e-43 180.6 162 58.6
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.0e-43 180.6 147 58.5
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.8e-43 179.9 147 63.3
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.8e-43 179.9 174 54.0
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.3e-43 179.5 150 60.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 4.0e-43 178.7 213 51.2
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 4.0e-43 178.7 181 53.6
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 6.8e-43 177.9 169 52.7
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.8e-43 177.9 177 57.1
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 8.9e-43 177.6 122 72.1
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.2e-42 177.2 102 87.3
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.2e-42 177.2 151 62.9
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.5e-42 176.8 143 58.7
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 2.0e-42 176.4 183 51.4
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 3.4e-42 175.6 149 61.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 4.4e-42 175.3 147 57.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 4.4e-42 175.3 143 58.0
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 4.4e-42 175.3 152 57.2
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 4.4e-42 175.3 147 57.8
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 5.7e-42 174.9 143 58.0
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 5.7e-42 174.9 143 58.0
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 5.7e-42 174.9 185 50.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 5.7e-42 174.9 141 64.5
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 5.7e-42 174.9 181 53.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 7.5e-42 174.5 151 61.6
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 9.8e-42 174.1 147 57.1
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.3e-41 173.7 145 58.6
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.7e-41 173.3 179 52.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.2e-41 172.9 147 57.1
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.2e-41 172.9 283 39.6
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 4.9e-41 171.8 147 62.6
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 8.3e-41 171.0 122 68.0
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.8e-40 169.9 183 50.3
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.8e-40 169.9 179 55.3
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.4e-40 169.5 180 54.4
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.0e-39 166.4 177 54.2
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.7e-39 166.0 146 55.5
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 7.8e-39 164.5 158 60.1
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 9.5e-37 157.5 124 62.9
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.1e-36 156.4 153 54.2
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 3.6e-36 155.6 177 48.0
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 8.0e-36 154.5 146 54.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 8.0e-36 154.5 140 56.4
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.0e-31 139.8 149 53.0
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 6.0e-31 138.3 181 44.8
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.3e-30 137.1 250 36.8
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.7e-30 136.7 129 51.2
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 6.6e-30 134.8 122 52.5
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.9e-29 133.3 147 49.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.9e-29 133.3 147 49.0
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 7.3e-29 131.3 117 61.5
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-28 130.6 148 46.6
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 4.0e-27 125.6 187 40.6
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.6e-26 122.9 139 47.5
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 4.4e-26 122.1 143 46.9
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 9.8e-26 120.9 128 53.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 9.8e-26 120.9 128 53.1
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.9e-25 118.6 150 50.0
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 2.7e-23 112.8 180 38.9
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 4.0e-19 99.0 89 61.8
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-18 96.3 108 48.1
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 6.4e-17 91.7 115 46.1
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 5.4e-16 88.6 168 38.1
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-09 66.6 121 36.4
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.9e-09 66.2 121 37.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.4e-08 63.9 48 64.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-08 63.5 88 40.9
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.4e-08 63.2 121 36.4
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.4e-08 62.0 121 35.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 9.3e-08 61.2 59 54.2
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.7e-07 59.7 117 35.9
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.7e-07 59.7 117 35.9
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-06 57.4 42 66.7
Cre17.g717250 Chlamydomonas reinhardtii HOM05D005090 ORTHO05D006142 5.1e-06 55.5 43 53.5


User provided reference genes

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