Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 4.1e-194 681.4 390 100.0
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 7.1e-138 494.6 443 72.7
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 8.3e-46 188.7 427 38.9
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 3.5e-44 183.3 417 37.4
CAN.G184.75 Capsicum annuum HOM05D001868 ORTHO05D009153 3.0e-27 127.1 197 42.6
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 2.1e-20 104.4 126 45.2
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 1.1e-18 98.6 97 48.5
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 5.6e-18 96.3 100 47.0
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 2.1e-17 94.4 101 48.5
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 8.1e-17 92.4 106 46.2
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 8.1e-17 92.4 128 41.4
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.1e-16 92.0 97 49.5
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.1e-16 92.0 99 47.5
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.4e-16 91.7 97 46.4
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 1.4e-16 91.7 99 45.5
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 1.8e-16 91.3 129 38.0
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.8e-16 91.3 111 45.0
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 5.2e-16 89.7 97 48.5
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 1.2e-15 88.6 99 48.5
Nitab4.5_0000575g0210 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.2e-15 88.6 96 52.1
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.6e-15 87.4 117 43.6
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.6e-15 87.4 117 43.6
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 2.6e-15 87.4 117 43.6
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.4e-15 87.0 98 46.9
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 3.4e-15 87.0 105 43.8
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.7e-14 84.7 103 42.7
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 2.9e-14 84.0 126 39.7
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 3.8e-14 83.6 98 43.9
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 1.1e-13 82.0 98 44.9
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 1.4e-13 81.6 101 42.6
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 1.9e-13 81.3 126 39.7
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 2.4e-13 80.9 87 43.7
Solyc05g009970.4 Solanum lycopersicum HOM05D008171 ORTHO05D006541 2.4e-13 80.9 422 30.3
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 3.2e-13 80.5 124 33.1
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 5.4e-13 79.7 98 42.9
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 2.7e-12 77.4 127 43.3
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 3.5e-12 77.0 117 36.8
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 6.0e-12 76.3 125 32.8
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 6.0e-12 76.3 100 40.0
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 1.0e-11 75.5 82 46.3
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 2.3e-11 74.3 106 37.7
Oeu023142.1 Olea europaea HOM05D008171 ORTHO05D006541 3.0e-11 73.9 121 44.6
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 3.0e-11 73.9 99 44.4
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 3.0e-11 73.9 101 37.6
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 3.9e-11 73.6 95 42.1
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 5.1e-11 73.2 106 35.8
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 6.6e-11 72.8 106 35.8
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 6.6e-11 72.8 106 36.8
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 8.6e-11 72.4 124 33.1
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 8.6e-11 72.4 116 34.5
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.5e-10 71.6 40 70.0
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 1.9e-10 71.2 106 34.9
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 1.9e-10 71.2 86 46.5
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 1.9e-10 71.2 146 31.5
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 1.9e-10 71.2 101 39.6
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 2.5e-10 70.9 117 32.5
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 2.5e-10 70.9 135 34.8
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 3.3e-10 70.5 114 37.7
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 4.3e-10 70.1 113 31.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 4.3e-10 70.1 113 31.9
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 4.3e-10 70.1 127 37.8
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 5.6e-10 69.7 97 37.1
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 5.6e-10 69.7 111 36.0
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 1.2e-09 68.6 131 32.8
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 1.2e-09 68.6 122 32.0
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 3.6e-09 67.0 131 32.1
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 3.6e-09 67.0 42 59.5
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 4.7e-09 66.6 126 29.4
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 6.2e-09 66.2 139 33.8
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 6.2e-09 66.2 119 33.6
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 8.1e-09 65.9 126 37.3
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 2.4e-08 64.3 111 37.8
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 2.4e-08 64.3 135 29.6
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 8.9e-08 62.4 127 27.6
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 1.5e-07 61.6 153 26.8
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 1.5e-07 61.6 109 33.0
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 2.0e-07 61.2 149 27.5
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 2.0e-07 61.2 127 32.3
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 3.4e-07 60.5 129 27.1
unitig_21.g20743 Utricularia gibba HOM05D050672 ORTHO05D006541 3.4e-07 60.5 43 55.8
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 4.4e-07 60.1 42 59.5
Medtr5g068870 Medicago truncatula HOM05D008729 ORTHO05D006541 5.8e-07 59.7 39 64.1
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 5.8e-07 59.7 39 61.5
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 7.6e-07 59.3 148 27.0
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 7.6e-07 59.3 118 38.1
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 7.6e-07 59.3 156 30.1
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 9.9e-07 58.9 39 56.4
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 9.9e-07 58.9 39 56.4
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 9.9e-07 58.9 114 28.9
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 1.3e-06 58.5 97 43.3
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 1.7e-06 58.2 39 59.0
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 1.7e-06 58.2 39 59.0
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 1.7e-06 58.2 39 59.0
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 2.2e-06 57.8 92 44.6
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.2e-06 57.8 39 53.8
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 2.2e-06 57.8 104 32.7
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 2.9e-06 57.4 102 32.4
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 3.8e-06 57.0 39 59.0
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 4.9e-06 56.6 141 24.8
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 4.9e-06 56.6 120 29.2
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 4.9e-06 56.6 39 56.4


User provided reference genes

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