Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 8.0e-163 577.0 287 100.0
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.8e-154 549.3 288 95.1
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 3.8e-141 505.0 288 88.5
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.2e-136 489.2 289 87.5
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.5e-124 449.1 290 80.3
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 3.5e-118 428.7 289 76.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 7.8e-118 427.6 288 75.7
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 7.8e-118 427.6 238 85.7
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.0e-117 427.2 290 74.5
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.9e-117 425.2 292 75.7
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 4.3e-116 421.8 286 74.8
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 4.3e-116 421.8 284 75.0
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 5.6e-116 421.4 266 79.7
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 9.5e-116 420.6 273 74.4
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-115 419.9 273 74.7
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 3.6e-115 418.7 286 73.4
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 4.7e-115 418.3 288 74.3
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.8e-114 416.4 286 74.5
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 2.3e-114 416.0 285 74.7
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.3e-114 416.0 269 75.5
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 4.0e-114 415.2 285 74.0
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 4.0e-114 415.2 281 73.0
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 5.2e-114 414.8 291 72.5
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 5.2e-114 414.8 279 74.6
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.8e-114 414.5 286 73.4
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.2e-113 413.7 287 73.5
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.5e-113 413.3 260 78.8
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.0e-113 412.9 288 72.9
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 4.4e-113 411.8 285 73.7
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.4e-113 411.8 285 73.7
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.4e-113 411.8 285 73.7
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.2e-112 409.5 275 73.8
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.9e-112 409.1 285 73.0
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 3.7e-112 408.7 282 73.4
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.4e-112 407.9 283 73.1
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 6.4e-112 407.9 283 73.1
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.4e-111 406.8 259 76.8
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 5.4e-111 404.8 252 78.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 5.4e-111 404.8 285 71.9
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 5.4e-111 404.8 240 81.7
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 5.4e-111 404.8 284 72.5
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 7.1e-111 404.4 240 80.0
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 6.0e-110 401.4 288 70.1
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 6.0e-110 401.4 260 77.7
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 7.8e-110 401.0 260 76.5
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.0e-109 400.6 249 75.9
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.7e-109 399.8 260 76.9
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 3.0e-109 399.1 267 71.5
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 5.1e-109 398.3 252 77.0
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 6.6e-109 397.9 283 71.4
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 6.6e-109 397.9 280 69.6
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 6.6e-109 397.9 251 76.1
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.6e-109 397.5 262 75.2
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 1.5e-108 396.7 285 70.5
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.9e-108 396.4 276 72.5
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 2.5e-108 396.0 267 73.4
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.5e-108 396.0 244 78.3
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 3.3e-108 395.6 247 77.7
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 3.3e-108 395.6 247 77.7
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 3.3e-108 395.6 263 75.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 7.3e-108 394.4 258 74.4
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 9.5e-108 394.0 249 77.5
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 9.5e-108 394.0 249 77.5
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 9.5e-108 394.0 245 78.0
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.6e-107 393.3 282 71.3
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 2.1e-107 392.9 236 78.8
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.1e-107 392.9 282 70.9
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 3.6e-107 392.1 262 73.3
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 6.2e-107 391.3 283 70.3
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 8.1e-107 391.0 239 77.0
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-106 390.6 241 78.4
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.4e-106 390.2 260 73.8
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-106 390.2 285 70.9
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.8e-106 389.8 283 69.3
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 4.0e-106 388.7 244 75.4
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 8.9e-106 387.5 240 75.4
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 2.6e-105 386.0 240 78.3
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.4e-105 385.6 244 75.8
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.4e-105 385.2 239 76.2
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 9.9e-105 384.0 260 73.1
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 9.9e-105 384.0 248 75.4
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 9.9e-105 384.0 248 75.4
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 9.9e-105 384.0 289 67.8
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.7e-104 383.3 241 76.3
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.2e-104 382.9 275 70.2
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 3.8e-104 382.1 259 73.0
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 3.8e-104 382.1 240 75.0
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 6.4e-104 381.3 283 68.2
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 4.2e-103 378.6 268 70.5
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 4.2e-103 378.6 247 74.9
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 7.1e-103 377.9 240 77.1
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.6e-102 376.7 225 80.0
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.1e-102 376.3 253 74.7
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 3.5e-102 375.6 224 79.9
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 6.0e-102 374.8 241 75.9
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 7.8e-102 374.4 278 67.3
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.7e-101 373.2 219 88.1
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.3e-101 372.9 242 74.4
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 6.6e-101 371.3 272 68.4
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.5e-100 370.2 243 73.3
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.5e-100 369.4 301 67.4
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 3.3e-100 369.0 240 74.6
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.8e-99 365.9 243 72.0
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 8.1e-99 364.4 243 70.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.8e-98 363.2 275 67.6
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 2.4e-98 362.8 404 50.5
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.2e-96 356.3 285 64.9
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.2e-96 356.3 288 65.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.4e-95 353.6 267 68.5
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.3e-92 342.4 225 74.2
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 5.6e-92 341.7 222 73.0
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.2e-86 323.9 255 63.1
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.3e-85 320.5 245 66.5
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.3e-85 320.5 243 63.4
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.5e-84 317.0 255 60.8
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 7.4e-84 314.7 238 65.1
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-79 300.8 191 75.9
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 3.2e-79 299.3 235 61.7
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 9.3e-79 297.7 240 64.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 6.5e-72 275.0 267 55.1
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.1e-71 274.2 175 74.9
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 6.7e-69 265.0 205 62.4
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 2.8e-67 259.6 226 59.7
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 9.0e-66 254.6 221 59.7
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-64 250.4 262 51.5
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 4.3e-60 235.7 163 73.0
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 4.8e-59 232.3 135 84.4
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 8.2e-59 231.5 257 49.0
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.5e-57 227.3 171 63.2
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 8.2e-51 204.9 263 46.0
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 2.5e-47 193.4 229 41.5
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.2e-47 193.0 220 44.5
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.8e-45 187.2 115 76.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.7e-43 180.6 124 71.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.2e-43 180.3 219 43.4
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 9.1e-42 174.9 126 69.0
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-38 164.5 115 68.7
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.2e-36 157.9 87 82.8
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 5.0e-32 142.5 84 79.8
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.5e-31 140.2 147 51.0
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 3.2e-31 139.8 116 60.3
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 8.8e-29 131.7 109 66.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 5.0e-24 115.9 95 61.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.6e-22 110.9 250 30.8
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-21 108.2 72 70.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.8e-17 92.0 47 87.2
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.9e-16 90.1 167 40.7
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.3e-15 86.3 86 52.3
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 2.4e-10 70.5 71 50.7
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 7.0e-10 68.9 238 26.5
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 7.0e-10 68.9 69 52.2
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 4.6e-09 66.2 236 27.5
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 4.6e-09 66.2 244 26.6
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 6.0e-09 65.9 244 26.6
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 6.0e-09 65.9 174 28.7
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 6.0e-09 65.9 242 26.9
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.0e-08 63.5 229 27.5
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.1e-06 57.4 223 24.7
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.7e-06 56.2 28 85.7
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.2e-06 55.8 37 70.3


User provided reference genes

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