Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.2e-127 458.4 223 100.0
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 2.2e-120 435.6 223 93.7
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 3.8e-120 434.9 223 93.7
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 5.0e-120 434.5 223 94.6
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 6.5e-120 434.1 223 93.3
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 5.5e-119 431.0 223 92.4
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.2e-113 413.3 266 80.5
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 3.6e-110 401.7 223 86.1
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.8e-109 397.1 224 86.2
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.8e-109 397.1 224 86.2
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.5e-108 396.4 223 85.2
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 2.0e-108 396.0 223 87.4
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.3e-108 395.2 223 84.8
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.3e-108 395.2 223 84.8
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 4.3e-108 394.8 223 86.1
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.7e-107 392.9 223 83.0
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.2e-107 392.5 223 84.3
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 8.2e-107 390.6 223 85.2
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 3.1e-106 388.7 223 83.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.3e-106 387.9 223 83.4
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 6.9e-106 387.5 223 83.0
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.5e-105 386.3 223 83.0
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.6e-105 385.6 223 83.9
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 3.4e-105 385.2 224 83.5
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.3e-104 383.3 223 80.7
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.2e-104 382.5 223 82.1
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 3.8e-104 381.7 223 81.2
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 8.5e-104 380.6 223 79.4
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 4.2e-103 378.3 224 79.5
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.6e-102 376.3 223 78.9
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.7e-102 375.6 223 81.2
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 2.7e-102 375.6 223 78.0
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.7e-102 374.8 223 80.7
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 4.7e-102 374.8 223 78.0
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 4.7e-102 374.8 223 80.3
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.8e-101 372.9 223 79.8
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 3.9e-101 371.7 223 78.9
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 5.1e-101 371.3 223 78.9
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-100 370.2 223 78.5
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-100 370.2 223 78.5
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-100 370.2 223 78.0
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 3.3e-100 368.6 223 78.5
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.7e-100 367.9 223 77.1
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 5.7e-100 367.9 223 79.4
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 9.7e-100 367.1 223 78.9
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.3e-99 366.7 223 78.5
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.2e-99 365.9 223 77.1
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.7e-99 365.2 223 76.7
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 4.8e-99 364.8 223 79.8
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 6.3e-99 364.4 223 77.6
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 8.2e-99 364.0 223 78.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.8e-98 362.8 223 77.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.8e-98 362.8 224 78.6
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.1e-98 362.1 223 78.0
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 3.1e-98 362.1 223 78.9
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.1e-98 361.7 223 78.5
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 5.3e-98 361.3 223 78.5
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.2e-97 360.1 223 78.0
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.2e-97 360.1 223 75.8
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.7e-96 356.3 224 75.9
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 2.9e-96 355.5 223 75.3
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 6.5e-96 354.4 278 64.7
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 5.5e-95 351.3 223 75.8
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 7.2e-95 350.9 206 81.6
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 1.6e-94 349.7 223 75.3
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 2.1e-94 349.4 223 73.1
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 8.0e-94 347.4 258 68.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.8e-93 346.3 223 74.9
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 3.0e-93 345.5 223 74.0
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 5.2e-93 344.7 197 83.8
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.5e-92 343.2 197 81.7
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.5e-92 343.2 223 74.4
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 2.0e-92 342.8 223 74.0
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 2.0e-92 342.8 223 73.1
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 4.4e-92 341.7 220 74.5
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 9.7e-92 340.5 226 74.3
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 2.2e-91 339.3 223 72.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 4.8e-91 338.2 223 72.2
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 6.3e-91 337.8 223 72.2
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 6.3e-91 337.8 223 72.2
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 8.2e-91 337.4 223 71.7
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.4e-90 336.7 223 71.7
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 4.1e-90 335.1 223 71.7
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 7.0e-90 334.3 223 72.2
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.6e-89 333.2 223 71.7
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.0e-89 332.8 223 70.9
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.0e-89 332.8 223 71.3
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 4.5e-89 331.6 223 71.7
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 1.7e-88 329.7 223 71.3
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.1e-87 327.0 223 71.3
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.9e-87 326.2 227 71.4
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.5e-87 325.9 215 74.0
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.2e-86 323.6 230 68.3
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 2.1e-86 322.8 223 69.5
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.7e-86 322.4 224 70.5
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 6.1e-86 321.2 225 69.8
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 6.1e-86 321.2 225 69.3
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.0e-85 318.9 223 70.4
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.5e-84 316.6 223 70.9
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 7.5e-84 314.3 223 70.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 2.4e-82 309.3 223 66.4
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 9.1e-82 307.4 223 66.4
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-81 307.0 223 66.8
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.6e-81 306.6 223 66.8
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.1e-79 300.4 223 67.3
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 7.2e-79 297.7 177 79.1
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.2e-78 297.0 223 70.4
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 3.6e-78 295.4 222 63.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 2.0e-73 279.6 223 61.0
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 4.5e-73 278.5 225 61.3
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.7e-72 276.6 223 65.0
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 5.0e-72 275.0 261 56.7
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 5.0e-72 275.0 261 56.7
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 2.8e-70 269.2 224 60.7
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 2.8e-70 269.2 207 62.3
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 6.1e-70 268.1 172 75.0
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 2.0e-68 263.1 227 62.1
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.3e-64 249.6 243 53.9
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 8.6e-64 247.7 250 56.4
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.4e-61 240.4 224 52.7
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-57 227.3 164 68.3
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.9e-56 222.2 224 50.9
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 8.9e-53 211.1 225 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 7.1e-50 201.4 225 47.1
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.8e-49 198.0 122 73.8
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 3.4e-44 182.6 215 44.2
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.7e-43 180.3 222 44.6
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.1e-42 175.6 230 43.5
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 8.6e-40 167.9 128 65.6
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-39 167.5 98 78.6
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-39 167.5 98 78.6
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 8.9e-37 157.9 206 47.6
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 4.6e-33 145.6 150 52.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.5e-28 129.0 72 77.8
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.0e-20 103.6 65 66.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.4e-20 102.8 51 92.2
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.4e-20 102.8 51 92.2
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.5e-20 102.4 57 87.7
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.6e-20 101.7 51 92.2
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.7e-19 100.5 103 52.4
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 2.7e-17 93.2 120 46.7
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 4.6e-17 92.4 73 54.8
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.8e-16 90.5 77 58.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.5e-15 86.7 76 61.8
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.1e-13 79.7 51 80.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.3e-13 79.0 51 74.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.2e-12 77.8 223 32.3
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 1.4e-10 70.9 64 60.9
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.5e-09 66.2 49 65.3
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.0e-08 64.7 51 62.7


User provided reference genes

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