Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-192 676.0 352 100.0
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.5e-182 641.0 352 94.6
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 8.3e-146 520.8 363 79.1
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.8e-100 370.2 341 64.8
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 5.1e-95 352.1 342 62.3
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.7e-95 351.7 342 63.2
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.3e-86 322.4 358 52.8
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.5e-78 297.4 356 50.6
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.6e-77 293.9 351 53.6
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 8.2e-77 291.6 411 45.7
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 5.1e-71 272.3 388 45.1
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 8.8e-71 271.6 370 48.9
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.2e-69 266.9 356 49.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.4e-68 263.5 407 43.2
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.7e-66 257.3 410 43.4
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.5e-66 255.4 414 45.7
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 6.5e-66 255.4 395 45.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.1e-64 250.4 358 48.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.6e-64 249.6 407 44.0
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 4.7e-64 249.2 362 47.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 3.0e-63 246.5 385 43.9
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 8.8e-63 245.0 359 47.1
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 8.8e-63 245.0 359 47.1
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.3e-62 243.0 417 41.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 5.7e-62 242.3 370 43.8
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 9.7e-62 241.5 410 40.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.7e-62 241.5 415 42.4
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.2e-61 240.4 403 42.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.2e-61 240.4 403 42.7
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.1e-60 238.0 437 40.7
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.8e-60 237.3 393 41.5
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.1e-60 236.1 419 41.3
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 5.3e-60 235.7 393 44.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 5.3e-60 235.7 430 40.5
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.5e-59 233.0 391 42.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 4.5e-59 232.6 410 39.8
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.7e-59 231.9 387 41.3
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.3e-58 231.1 379 43.8
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.2e-58 230.3 408 42.4
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.9e-58 229.9 408 42.4
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.9e-58 229.9 402 41.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 3.8e-58 229.6 390 42.1
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 5.0e-58 229.2 415 40.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 5.0e-58 229.2 415 40.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.0e-58 229.2 366 47.0
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 6.5e-58 228.8 391 42.5
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.5e-58 228.8 366 47.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.2e-57 226.1 391 41.9
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.6e-56 224.2 302 48.0
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.7e-56 223.4 368 47.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.7e-56 223.4 424 40.1
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.6e-56 223.0 418 40.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.8e-55 220.7 429 39.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.3e-55 220.3 425 39.5
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.0e-55 219.9 426 39.4
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.0e-55 219.9 426 39.4
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 6.7e-55 218.8 366 44.5
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 2.6e-54 216.9 398 40.5
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.3e-53 214.5 399 39.1
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 6.3e-53 212.2 412 38.8
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 6.3e-53 212.2 391 41.9
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 6.3e-53 212.2 368 47.8
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.1e-52 211.5 357 45.9
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 5.3e-52 209.1 371 44.5
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 5.3e-52 209.1 344 42.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.0e-51 207.2 247 57.5
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 3.5e-51 206.5 420 38.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 4.5e-51 206.1 410 38.8
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.7e-50 204.1 358 41.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.2e-50 203.8 228 53.1
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 7.2e-49 198.7 355 41.1
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 7.2e-49 198.7 342 41.5
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 7.2e-49 198.7 331 41.4
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.2e-48 198.0 422 38.2
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-48 198.0 366 36.3
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-48 198.0 366 36.3
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 2.1e-48 197.2 422 37.9
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-48 197.2 414 38.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-48 197.2 366 36.6
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 8.0e-48 195.3 348 44.8
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 8.0e-48 195.3 348 44.8
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.4e-47 194.5 415 38.8
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-46 191.4 367 40.9
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.0e-46 190.7 368 40.8
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-46 190.3 416 38.2
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.6e-46 190.3 349 39.3
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.5e-46 188.7 368 35.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 4.8e-45 186.0 401 39.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 6.3e-45 185.7 401 40.1
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-44 184.1 402 39.8
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.8e-44 184.1 402 39.8
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 7.0e-44 182.2 375 38.7
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 4.5e-43 179.5 429 37.1
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-42 177.2 365 40.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-42 177.2 365 40.8
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 5.0e-42 176.0 354 36.4
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.1e-40 170.6 377 37.7
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 4.7e-40 169.5 439 34.9
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 2.3e-39 167.2 397 34.5
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.2e-38 164.9 271 43.5
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 5.7e-38 162.5 375 40.0
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 7.5e-38 162.2 381 39.4
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.7e-37 161.0 248 45.6
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.2e-37 160.6 387 36.2
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.4e-36 157.9 365 38.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.2e-36 155.2 402 37.6
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.7e-35 153.7 426 31.7
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 4.5e-35 152.9 384 36.5
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 4.5e-35 152.9 196 53.1
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 3.8e-34 149.8 249 42.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.5e-33 147.9 377 35.3
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 8.0e-32 142.1 360 39.2
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 3.0e-31 140.2 354 34.7
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.0e-30 137.5 398 32.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.4e-30 136.7 282 35.8
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 7.5e-30 135.6 261 39.5
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.8e-30 135.2 366 35.5
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 9.8e-30 135.2 257 42.4
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 2.9e-29 133.7 244 38.9
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.9e-29 133.7 243 39.9
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.1e-28 131.7 397 33.2
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.1e-28 131.7 402 31.6
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-28 131.3 305 34.1
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.8e-28 131.0 112 61.6
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.0e-27 127.5 306 39.2
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 2.7e-27 127.1 245 40.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.7e-27 127.1 245 40.4
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 2.7e-27 127.1 245 40.4
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.5e-27 126.7 383 31.6
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 3.5e-27 126.7 234 39.3
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.3e-26 124.8 398 30.9
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.3e-26 124.0 379 33.0
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 3.9e-26 123.2 398 30.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 5.0e-26 122.9 254 38.6
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.7e-24 116.3 268 38.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.0e-23 115.2 250 38.4
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.0e-23 115.2 246 37.8
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 8.9e-23 112.1 228 37.7
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 3.7e-21 106.7 229 38.0
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 4.1e-20 103.2 381 29.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.9e-18 96.7 248 36.7
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 4.3e-17 93.2 411 29.7
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.1e-16 90.9 403 30.0
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-14 85.1 243 34.2
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.6e-14 84.0 150 42.0
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 3.4e-14 83.6 259 34.0
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 3.4e-14 83.6 118 42.4
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.4e-14 83.6 126 42.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.4e-14 83.2 118 48.3
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-13 80.1 245 30.6
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 3.2e-12 77.0 198 31.8
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.7e-10 71.2 131 34.4
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 3.0e-10 70.5 273 30.8
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 5.1e-10 69.7 248 31.9
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.5e-09 65.5 168 35.7
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 3.1e-07 60.5 187 34.8
Peaxi162Scf00188g00418 Petunia axillaris HOM05D004568 ORTHO05D005343 5.2e-07 59.7 81 55.6


User provided reference genes

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