Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.4e-162 576.2 291 100.0
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.0e-134 481.1 261 93.1
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.3e-124 448.4 267 85.4
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.5e-121 439.9 255 86.3
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.2e-115 419.5 271 77.5
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 4.8e-115 418.3 271 77.1
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 7.7e-113 411.0 262 77.5
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 7.7e-113 411.0 262 77.5
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 7.7e-113 411.0 262 77.5
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 7.7e-113 411.0 262 78.2
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.3e-112 410.2 261 78.2
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.2e-80 303.1 264 58.0
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.1e-74 282.3 253 54.5
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.6e-72 275.0 275 52.7
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.2e-70 270.8 251 55.0
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.6e-68 263.1 266 52.3
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 7.5e-68 261.5 251 53.8
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.7e-67 260.4 251 53.0
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.2e-67 260.0 271 49.8
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 2.8e-67 259.6 250 54.8
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.9e-67 258.8 254 50.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 4.9e-67 258.8 248 54.0
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.4e-66 256.5 250 50.4
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 7.0e-66 255.0 260 49.6
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 9.2e-66 254.6 246 54.1
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 9.2e-66 254.6 251 51.8
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.2e-65 254.2 254 51.2
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.0e-65 253.4 251 52.6
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.7e-65 253.1 252 49.6
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.3e-64 250.8 251 51.8
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 8.6e-64 248.1 284 48.2
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.5e-63 247.3 281 47.0
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.9e-63 246.9 259 49.0
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.3e-63 246.1 252 49.2
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 4.3e-63 245.7 286 48.3
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.5e-63 244.6 252 49.2
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-62 244.2 255 49.0
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-62 244.2 255 49.0
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.2e-62 244.2 249 50.6
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 3.6e-62 242.7 259 49.0
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 8.0e-62 241.5 255 49.0
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.0e-62 241.5 255 49.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.3e-61 240.0 247 50.2
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 2.3e-61 240.0 249 48.6
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-61 239.6 245 49.4
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-61 239.6 245 49.4
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.0e-61 239.2 255 48.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-61 239.2 245 49.4
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-61 239.2 245 49.4
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-61 238.8 245 49.0
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-61 238.8 245 49.0
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 5.2e-61 238.8 238 52.5
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 6.8e-61 238.4 206 57.3
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.8e-61 238.4 245 49.0
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.9e-61 238.0 255 48.2
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-60 237.7 245 49.0
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-60 237.7 247 48.6
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-60 237.3 245 49.0
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.6e-60 236.5 261 47.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.4e-60 236.1 255 49.0
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-60 235.3 245 49.0
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.3e-59 234.2 258 50.8
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.7e-59 233.8 257 47.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 2.2e-59 233.4 251 48.6
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 6.4e-59 231.9 276 44.6
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 8.3e-59 231.5 247 50.2
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.1e-58 231.1 257 47.1
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.9e-58 230.3 257 47.1
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 3.2e-58 229.6 260 47.7
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 4.1e-58 229.2 250 48.8
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 4.1e-58 229.2 258 46.9
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 5.4e-58 228.8 251 48.6
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.2e-57 227.6 253 49.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.0e-57 226.9 253 46.2
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.7e-57 226.5 258 48.1
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.5e-57 226.1 256 49.6
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 4.6e-57 225.7 255 47.8
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 7.8e-57 224.9 141 77.3
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.0e-56 223.0 253 48.2
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 6.6e-56 221.9 250 46.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-55 219.2 251 47.8
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.1e-53 213.0 256 46.1
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 4.0e-53 212.6 264 44.7
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 6.8e-53 211.8 225 49.8
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 8.9e-53 211.5 254 46.1
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 8.9e-53 211.5 283 43.5
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-52 211.1 200 52.0
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.0e-52 210.3 288 44.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.0e-52 210.3 288 44.4
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 3.4e-52 209.5 258 45.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.4e-52 209.1 267 46.4
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 5.8e-52 208.8 262 43.1
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.2e-51 206.8 285 42.8
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 6.4e-51 205.3 255 47.5
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 5.4e-50 202.2 275 41.8
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.5e-49 199.5 282 44.7
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.3e-48 196.8 250 47.6
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 3.9e-48 196.1 271 45.4
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 5.1e-48 195.7 254 43.7
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.1e-47 194.5 254 44.1
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 2.5e-47 193.4 222 46.4
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.6e-46 190.7 248 46.0
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.1e-46 190.3 252 46.4
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 4.7e-46 189.1 245 40.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 4.0e-45 186.0 263 46.0
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.0e-45 186.0 168 57.7
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.0e-45 186.0 198 48.0
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 3.4e-44 183.0 249 45.0
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 4.4e-44 182.6 252 46.0
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-44 182.2 166 51.8
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-44 182.2 166 51.8
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 2.9e-43 179.9 213 41.8
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-43 179.1 166 51.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.4e-43 178.7 154 59.7
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 5.4e-42 175.6 252 43.3
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 5.4e-42 175.6 252 43.3
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 9.2e-42 174.9 177 48.6
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.2e-41 174.5 252 40.1
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.1e-41 173.7 251 43.0
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 2.1e-41 173.7 255 39.2
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 4.6e-41 172.6 251 42.6
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 4.6e-41 172.6 251 42.6
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.3e-40 170.2 260 40.8
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 8.6e-40 168.3 194 49.5
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.1e-38 163.7 197 44.2
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.3e-35 154.5 255 40.0
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.2e-35 153.7 250 36.8
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.2e-35 153.7 244 39.3
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.9e-35 152.5 245 40.0
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.4e-34 150.2 262 37.4
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-33 147.9 161 48.4
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 3.5e-33 146.4 217 41.9
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 8.7e-32 141.7 190 42.1
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.1e-30 135.2 135 49.6
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.4e-29 134.4 241 35.7
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.8e-28 129.0 125 54.4
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.7e-19 100.9 203 29.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 2.1e-17 94.0 168 33.3
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.8e-16 90.9 209 31.1
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 4.3e-15 86.3 199 29.6
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 3.1e-13 80.1 97 48.5
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.2e-12 78.2 100 39.0
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-10 70.1 97 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 9.3e-10 68.6 157 33.1
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.6e-09 67.8 61 54.1
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.7e-08 62.4 80 43.8


User provided reference genes

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