Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004646g0090 Nicotiana tabacum HOM05D003543 ORTHO05D004112 4.3e-97 359.0 361 100.0
PGSC0003DMG400023602 Solanum tuberosum HOM05D003543 ORTHO05D004112 2.0e-54 217.2 452 71.0
Sopen04g006940 Solanum pennellii HOM05D003543 ORTHO05D004112 3.0e-50 203.4 451 65.4
Solyc04g014810.3 Solanum lycopersicum HOM05D003543 ORTHO05D004112 8.7e-50 201.8 451 64.1
Nitab4.5_0001109g0090 Nicotiana tabacum HOM05D003543 ORTHO05D017182 8.2e-48 195.3 327 62.4
PGSC0003DMG400013286 Solanum tuberosum HOM05D003543 ORTHO05D004112 6.9e-47 192.2 459 61.4
Solyc11g012440.1 Solanum lycopersicum HOM05D003543 ORTHO05D004112 4.5e-46 189.5 459 63.2
Peaxi162Scf00520g00221 Petunia axillaris HOM05D003543 ORTHO05D004112 8.5e-45 185.3 245 52.7
Nitab4.5_0003626g0080 Nicotiana tabacum HOM05D003543 ORTHO05D004112 3.2e-44 183.3 467 63.0
Peaxi162Scf00352g00096 Petunia axillaris HOM05D003543 ORTHO05D004112 1.6e-43 181.0 462 64.9
Sopen11g007180 Solanum pennellii HOM05D003543 ORTHO05D004112 1.6e-43 181.0 460 65.2
CAN.G1263.22 Capsicum annuum HOM05D003543 ORTHO05D004112 2.7e-43 180.3 451 67.6
Nitab4.5_0000143g0100 Nicotiana tabacum HOM05D003543 ORTHO05D004112 1.1e-41 174.9 477 60.0
MSTRG.16032 Avicennia marina HOM05D003543 ORTHO05D004112 1.5e-38 164.5 445 65.4
Dinv05019 Davidia involucrata HOM05D003543 ORTHO05D004112 2.0e-38 164.1 461 64.9
Migut.H01613 Erythranthe guttata HOM05D003543 ORTHO05D004112 5.0e-37 159.5 464 55.2
Migut.M01414 Erythranthe guttata HOM05D003543 ORTHO05D004112 8.5e-37 158.7 459 60.1
CANSAT56G0448 Cannabis sativa HOM05D003543 ORTHO05D004112 1.1e-36 158.3 452 60.2
CSS0034148 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 2.5e-36 157.1 443 65.0
Oeu022953.1 Olea europaea HOM05D003543 ORTHO05D004112 3.2e-36 156.8 462 59.7
MSTRG.7156 Avicennia marina HOM05D003543 ORTHO05D004112 7.2e-36 155.6 450 60.7
Prupe.4G008500 Prunus persica HOM05D003543 ORTHO05D004112 1.2e-35 154.8 455 59.8
QL05p069094 Quercus lobata HOM05D003543 ORTHO05D004112 1.2e-35 154.8 465 59.6
Dinv32066 Davidia involucrata HOM05D003543 ORTHO05D004112 1.6e-35 154.5 458 63.8
MD05G1359600 Malus domestica HOM05D003543 ORTHO05D004112 2.1e-35 154.1 456 59.4
Lj2A260T84 Lonicera japonica HOM05D003543 ORTHO05D004112 2.7e-35 153.7 444 63.5
FvH4_3g00770 Fragaria vesca HOM05D003543 ORTHO05D004112 4.7e-35 152.9 453 64.7
Hma1.2p1_0657F.1_g197030 Hydrangea macrophylla HOM05D003543 ORTHO05D004112 6.1e-35 152.5 458 64.2
CSS0010074 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 7.9e-35 152.1 456 63.2
Duzib235G1522 Durio zibethinus HOM05D003543 ORTHO05D004112 7.9e-35 152.1 464 62.5
PGR004G1420 Punica granatum HOM05D003543 ORTHO05D004112 1.4e-34 151.4 452 64.6
Gorai.010G188000 Gossypium raimondii HOM05D003543 ORTHO05D004112 3.0e-34 150.2 464 62.3
MD10G1335100 Malus domestica HOM05D003543 ORTHO05D004112 3.0e-34 150.2 456 63.6
FAN25G1985 Fragaria x ananassa HOM05D003543 ORTHO05D004112 3.9e-34 149.8 453 64.2
COL.COLO4_31904 Corchorus olitorius HOM05D003543 ORTHO05D004112 5.2e-34 149.4 466 61.8
CsaV3_6G048440 Cucumis sativus L. HOM05D003543 ORTHO05D004112 5.2e-34 149.4 460 62.8
RcHm_v2.0_Chr5g0001011 Rosa chinensis HOM05D003543 ORTHO05D004112 5.2e-34 149.4 455 64.0
FAN21G0242 Fragaria x ananassa HOM05D003543 ORTHO05D004112 8.8e-34 148.7 454 64.3
Sed0004311 Sechium edule HOM05D003543 ORTHO05D004112 8.8e-34 148.7 458 63.1
TWI63G1747 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 8.8e-34 148.7 461 61.8
ClCG01G021420 Citrullus lanatus HOM05D003543 ORTHO05D004112 1.1e-33 148.3 461 62.7
Gohir.D06G161100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.1e-33 148.3 464 62.1
Actinidia02307 Actinidia chinensis HOM05D003543 ORTHO05D004112 1.5e-33 147.9 456 63.6
Manes.08G070984 Manihot esculenta HOM05D003543 ORTHO05D004112 3.3e-33 146.7 466 61.8
CAN.G696.20 Capsicum annuum HOM05D003543 ORTHO05D004112 7.4e-33 145.6 255 40.0
Nn1g03263 Nelumbo nucifera HOM05D003543 ORTHO05D004112 7.4e-33 145.6 454 58.6
Thecc.06G235100 Theobroma cacao HOM05D003543 ORTHO05D004112 7.4e-33 145.6 463 61.6
Oeu030109.1 Olea europaea HOM05D003543 ORTHO05D004112 9.7e-33 145.2 453 58.9
Lj1A1241T70 Lonicera japonica HOM05D003543 ORTHO05D004112 1.8e-31 141.0 456 62.5
Atru.chr1.2368 Acer truncatum HOM05D003543 ORTHO05D004112 3.1e-31 140.2 464 59.5
Phvul.006G142100 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 3.1e-31 140.2 458 62.4
Gohir.A06G154400 Gossypium hirsutum HOM05D003543 ORTHO05D004112 4.1e-31 139.8 466 61.4
Cpa.g.sc75.99 Carica papaya HOM05D003543 ORTHO05D004112 5.3e-31 139.4 464 60.3
Ca_00736_v3 Cicer arietinum L. HOM05D003543 ORTHO05D004112 5.3e-31 139.4 458 61.6
Glyma.09G011300 Glycine max HOM05D003543 ORTHO05D004112 5.3e-31 139.4 458 62.2
Duzib192G0760 Durio zibethinus HOM05D003543 ORTHO05D004112 9.1e-31 138.7 464 61.2
CSS0020081 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 5.9e-30 136.0 459 57.7
Sed0014537 Sechium edule HOM05D003543 ORTHO05D004112 1.0e-29 135.2 456 62.1
VMungo0540G1194 Vigna mungo HOM05D003543 ORTHO05D004112 1.0e-29 135.2 458 62.2
Rhsim13G0144100 Rhododendron simsii HOM05D003543 ORTHO05D004112 3.8e-29 133.3 241 41.1
Psat1g174720 Pisum sativum HOM05D003543 ORTHO05D004112 8.5e-29 132.1 458 61.4
SalBow8G1766 Salvia bowleyana HOM05D003543 ORTHO05D004112 3.2e-28 130.2 231 40.3
Cfa000083 Carpinus fangiana HOM05D003543 ORTHO05D004112 4.2e-28 129.8 469 53.7
Haze_06957 Corylus avellana HOM05D003543 ORTHO05D004112 4.2e-28 129.8 469 53.5
Lalb_Chr20g0119331 Lupinus albus HOM05D003543 ORTHO05D004112 4.2e-28 129.8 448 57.6
Ciclev10018015m.g Citrus clementina HOM05D003543 ORTHO05D004112 5.5e-28 129.4 251 38.2
Glyma.15G115800 Glycine max HOM05D003543 ORTHO05D004112 5.5e-28 129.4 457 61.5
CiPaw.09G104000 Carya illinoinensis HOM05D003543 ORTHO05D004112 7.2e-28 129.0 457 54.0
DCAR_004899 Daucus carota HOM05D003543 ORTHO05D004112 7.2e-28 129.0 243 40.3
Lj6g0020811 Lotus japonicus HOM05D003543 ORTHO05D004112 1.2e-27 128.3 456 60.1
Oeu002770.1 Olea europaea HOM05D003543 ORTHO05D004112 1.2e-27 128.3 242 38.8
SGA_v2.0_scaffold7G03732 Striga asiatica HOM05D003543 ORTHO05D004112 1.2e-27 128.3 462 57.1
Medtr2g026130 Medicago truncatula HOM05D003543 ORTHO05D004112 2.1e-27 127.5 465 60.2
Oeu047063.1 Olea europaea HOM05D003543 ORTHO05D004112 2.1e-27 127.5 243 39.5
TPR.G10581 Trifolium pratense HOM05D003543 ORTHO05D004112 2.1e-27 127.5 458 60.3
TAR626G1558 Trochodendron aralioides HOM05D003543 ORTHO05D004112 2.1e-27 127.5 242 38.4
BcaC06g33483 Brassica carinata HOM05D003543 ORTHO05D004112 1.0e-26 125.2 453 41.1
Eucgr.D01428 Eucalyptus grandis HOM05D003543 ORTHO05D004112 1.0e-26 125.2 473 59.2
Nn1g07428 Nelumbo nucifera HOM05D003543 ORTHO05D004112 1.0e-26 125.2 247 38.1
QL05p068721 Quercus lobata HOM05D003543 ORTHO05D004112 1.4e-26 124.8 253 39.5
Duzib160G0009 Durio zibethinus HOM05D003543 ORTHO05D004112 4.0e-26 123.2 465 60.0
MELO3C007441.2 Cucumis melo HOM05D003543 ORTHO05D004112 8.8e-26 122.1 246 38.2
arahy.Tifrunner.gnm1.ann1.09PW0C Arachis hypogaea HOM05D003543 ORTHO05D004112 2.6e-25 120.6 466 56.0
arahy.Tifrunner.gnm1.ann1.ZLF8NQ Arachis hypogaea HOM05D003543 ORTHO05D004112 2.6e-25 120.6 466 56.0
BraA03t14083Z Brassica rapa HOM05D003543 ORTHO05D004112 2.6e-25 120.6 245 38.0
TAR629G3525 Trochodendron aralioides HOM05D003543 ORTHO05D004112 3.3e-25 120.2 453 54.3
Lalb_Chr18g0057071 Lupinus albus HOM05D003543 ORTHO05D004112 4.4e-25 119.8 462 56.5
Sp7g15040 Schrenkiella parvula HOM05D003543 ORTHO05D004112 4.4e-25 119.8 471 54.6
BolC7t45317H Brassica oleracea HOM05D003543 ORTHO05D004112 5.7e-25 119.4 243 37.4
BcaNung00189 Brassica carinata HOM05D003543 ORTHO05D004112 1.3e-24 118.2 465 55.3
BcaNung02874 Brassica carinata HOM05D003543 ORTHO05D004112 2.8e-24 117.1 243 37.0
C07p47940 Brassica napus HOM05D003543 ORTHO05D004112 2.8e-24 117.1 243 37.0
TWI38G1278 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 3.7e-24 116.7 418 62.7
vmacro03632 Vaccinium macrocarpon HOM05D003543 ORTHO05D004112 3.7e-24 116.7 250 37.2
Aa31LG9G12240 Aethionema arabicum HOM05D003543 ORTHO05D004112 6.3e-24 115.9 472 55.3
Cc09_g00700 Coffea canephora HOM05D003543 ORTHO05D004112 6.3e-24 115.9 475 47.2
Potri.006G015100 Populus trichocarpa HOM05D003543 ORTHO05D004112 6.3e-24 115.9 486 45.9
PSO541G5465 Papaver somniferum HOM05D003543 ORTHO05D004112 8.2e-24 115.5 447 60.2
Actinidia04652 Actinidia chinensis HOM05D003543 ORTHO05D004112 1.1e-23 115.2 388 66.8
Gorai.009G183500 Gossypium raimondii HOM05D003543 ORTHO05D004112 1.4e-23 114.8 426 62.9
BcaC09g50355 Brassica carinata HOM05D003543 ORTHO05D004112 1.8e-23 114.4 466 54.7
C01p26290 Brassica napus HOM05D003543 ORTHO05D004112 1.8e-23 114.4 463 54.9
BolC1t02576H Brassica oleracea HOM05D003543 ORTHO05D004112 1.8e-23 114.4 463 54.9
Hund23399 Selenicereus undatus HOM05D003543 ORTHO05D004112 1.8e-23 114.4 477 43.8
A01p21010 Brassica napus HOM05D003543 ORTHO05D004112 2.4e-23 114.0 466 54.9
BraA01t02016Z Brassica rapa HOM05D003543 ORTHO05D004112 2.4e-23 114.0 466 54.9
GSVIVG01006098001 Vitis vinifera HOM05D003543 ORTHO05D004112 2.4e-23 114.0 375 31.5
Aqoxy4G02200 Aquilegia oxysepala HOM05D003543 ORTHO05D004112 3.1e-23 113.6 435 61.8
PSO541G0019 Papaver somniferum HOM05D003543 ORTHO05D004112 3.1e-23 113.6 439 55.1
CARHR222890 Cardamine hirsuta HOM05D003543 ORTHO05D004112 5.3e-23 112.8 472 54.2
CiPaw.10G079000 Carya illinoinensis HOM05D003543 ORTHO05D004112 5.3e-23 112.8 463 55.5
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 5.3e-23 112.8 250 37.2
Lsat_1_v5_gn_7_13800 Lactuca sativa HOM05D003543 ORTHO05D004112 9.1e-23 112.1 250 36.4
Sc05g0009680 Simmondsia chinensis HOM05D003543 ORTHO05D004112 9.1e-23 112.1 475 54.5
MSTRG.14606 Avicennia marina HOM05D003543 ORTHO05D004112 1.2e-22 111.7 236 37.7
PSO675G9394 Papaver somniferum HOM05D003543 ORTHO05D004112 1.2e-22 111.7 447 60.2
TAR631G0001 Trochodendron aralioides HOM05D003543 ORTHO05D004112 1.2e-22 111.7 245 36.3
Gohir.D05G178100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.6e-22 111.3 435 61.4
Sabra16G0014300 Salix brachista HOM05D003543 ORTHO05D004112 1.6e-22 111.3 261 34.1
VMungo1215G1690 Vigna mungo HOM05D003543 ORTHO05D004112 1.6e-22 111.3 448 61.2
CDE02G1583 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 2.0e-22 110.9 448 54.9
Thhalv10025098m.g Eutrema salsugineum HOM05D003543 ORTHO05D004112 2.7e-22 110.5 471 53.7
unitig_748.g7602 Utricularia gibba HOM05D003543 ORTHO05D004112 3.5e-22 110.2 239 37.2
A03p49880 Brassica napus HOM05D003543 ORTHO05D004112 4.5e-22 109.8 239 36.8
Gohir.A05G175100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 4.5e-22 109.8 426 62.7
Lsat_1_v5_gn_4_63420 Lactuca sativa HOM05D003543 ORTHO05D004112 4.5e-22 109.8 463 50.1
THA.LOC104815484 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 4.5e-22 109.8 254 33.5
Phvul.003G084700 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 5.9e-22 109.4 449 61.0
HPP92_006094 Vanilla planifolia HOM05D003543 ORTHO05D004112 5.9e-22 109.4 424 58.0
SGA_v2.0_scaffold7G03734 Striga asiatica HOM05D003543 ORTHO05D004112 7.7e-22 109.0 214 38.3
ECA234G1693 Erigeron canadensis HOM05D003543 ORTHO05D004112 1.0e-21 108.6 474 45.4
PSO781G0286 Papaver somniferum HOM05D003543 ORTHO05D004112 1.0e-21 108.6 436 54.6
HanXRQChr16g0517001 Helianthus annuus HOM05D003543 ORTHO05D004112 1.3e-21 108.2 478 45.6
Potri.016G010800 Populus trichocarpa HOM05D003543 ORTHO05D004112 2.9e-21 107.1 265 34.0
THA.LOC104813330 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 2.9e-21 107.1 441 40.8
PGR042G2126 Punica granatum HOM05D003543 ORTHO05D004112 5.0e-21 106.3 262 35.9
SGA_v2.0_scaffold89G27513 Striga asiatica HOM05D003543 ORTHO05D004112 5.0e-21 106.3 458 46.7
Aa31LG2G12560 Aethionema arabicum HOM05D003543 ORTHO05D004112 8.5e-21 105.5 258 34.5
Ah.09g234170 Amaranthus hybridus HOM05D003543 ORTHO05D004112 1.1e-20 105.1 253 34.8
EL10Ac8g20219 Beta vulgaris HOM05D003543 ORTHO05D004112 1.1e-20 105.1 257 35.0
Sabra06G0010600 Salix brachista HOM05D003543 ORTHO05D004112 1.6e-19 101.3 271 32.1
Carub.0007s2501 Capsella rubella HOM05D003543 ORTHO05D004112 1.0e-18 98.6 468 53.2
MBI16_g42305_MAGBIO Magnolia biondii HOM05D003543 ORTHO05D004112 1.4e-18 98.2 440 54.5
HanXRQChr09g0238241 Helianthus annuus HOM05D003543 ORTHO05D004112 2.3e-18 97.4 250 36.0
Zm00001eb325810 Zea mays HOM05D030178 ORTHO05D004112 8.8e-18 95.5 435 55.9
AT4G16490 Arabidopsis thaliana HOM05D003543 ORTHO05D004112 2.0e-17 94.4 472 52.5
Glyma.07G266400 Glycine max HOM05D003543 ORTHO05D004112 2.6e-17 94.0 424 57.5
Glyma.17G007900 Glycine max HOM05D003543 ORTHO05D004112 4.4e-17 93.2 424 57.1
Ah.14g087540 Amaranthus hybridus HOM05D003543 ORTHO05D004112 9.8e-17 92.0 253 32.8
HanXRQChr17g0559481 Helianthus annuus HOM05D003543 ORTHO05D004112 9.8e-17 92.0 483 46.4
AL7G38470 Arabidopsis lyrata HOM05D003543 ORTHO05D004112 1.7e-16 91.3 472 52.3
Zm00001eb107940 Zea mays HOM05D030178 ORTHO05D004112 1.4e-15 88.2 231 31.6
Lj4A116T83 Lonicera japonica HOM05D000952 ORTHO05D000757 7.0e-15 85.9 104 51.0
CDE05G1329 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 2.0e-14 84.3 101 51.5
MD11G1170200 Malus domestica HOM05D003543 ORTHO05D004112 4.5e-14 83.2 156 37.8
unitig_32.g11370 Utricularia gibba HOM05D003543 ORTHO05D004112 1.3e-13 81.6 120 46.7
HanXRQChr04g0094851 Helianthus annuus HOM05D003543 ORTHO05D004112 5.0e-13 79.7 257 31.9
AUR62021839 Chenopodium quinoa HOM05D003543 ORTHO05D004112 7.2e-12 75.9 388 42.0
AUR62012814 Chenopodium quinoa HOM05D003543 ORTHO05D004112 9.5e-12 75.5 392 42.1
HanXRQChr14g0451341 Helianthus annuus HOM05D003543 ORTHO05D004112 1.6e-11 74.7 259 32.0
unitig_32.g11369 Utricularia gibba HOM05D003543 ORTHO05D004112 3.6e-11 73.6 73 82.2
CDE05G3523 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 4.7e-11 73.2 73 53.4
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 8.0e-11 72.4 115 44.3
BcaNung02875 Brassica carinata HOM05D003543 ORTHO05D004112 3.0e-10 70.5 39 79.5
Sc24g0000310 Simmondsia chinensis HOM05D003543 ORTHO05D004112 2.0e-09 67.8 249 83.9
MELO3C024097.2 Cucumis melo HOM05D000318 ORTHO05D004112 2.6e-09 67.4 62 87.1
Aa31sc262G30 Aethionema arabicum HOM05D003543 ORTHO05D004112 9.8e-09 65.5 43 62.8
Lsat_1_v5_gn_9_117501 Lactuca sativa HOM05D003543 ORTHO05D004112 9.8e-09 65.5 34 82.4
Lj7C75G1 Lonicera japonica HOM05D003543 ORTHO05D004112 4.9e-08 63.2 83 44.6
Os07g0584900 Oryza sativa ssp. japonica HOM05D003543 ORTHO05D004112 2.4e-07 60.8 241 27.8
Aqoxy2G01773 Aquilegia oxysepala HOM05D000215 ORTHO05D001676 5.4e-07 59.7 39 69.2
HanXRQChr09g0254301 Helianthus annuus HOM05D003543 ORTHO05D004112 5.4e-07 59.7 38 73.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 9.2e-07 58.9 42 66.7
CDE02G0949 Ceratophyllum demersum HOM05D000215 ORTHO05D001676 1.2e-06 58.5 40 67.5
HPP92_015393 Vanilla planifolia HOM05D000215 ORTHO05D001676 2.0e-06 57.8 95 42.1
HPP92_027001 Vanilla planifolia HOM05D000215 ORTHO05D001676 2.0e-06 57.8 95 42.1
Ah.13g071580 Amaranthus hybridus HOM05D000215 ORTHO05D001676 2.7e-06 57.4 44 59.1
vmacro04844 Vaccinium macrocarpon HOM05D000215 ORTHO05D001676 3.5e-06 57.0 39 66.7
Zm00001eb190130 Zea mays HOM05D000215 ORTHO05D005049 3.5e-06 57.0 42 64.3
DCAR_030861 Daucus carota HOM05D003543 ORTHO05D004112 4.5e-06 56.6 111 40.5
SMO146G0291 Selaginella moellendorffii HOM05D000215 ORTHO05D008904 4.5e-06 56.6 42 61.9
SEGI_27013 Sequoiadendron giganteum HOM05D000215 ORTHO05D002239 4.5e-06 56.6 42 64.3


User provided reference genes

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