Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.1e-215 751.5 373 100.0
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.1e-207 726.5 373 96.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.5e-169 599.0 374 80.5
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.8e-168 595.5 377 80.4
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.5e-166 589.7 377 80.1
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.5e-166 588.2 377 79.6
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 7.4e-161 570.9 376 78.5
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.1e-159 565.5 375 76.0
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.7e-157 559.7 378 75.1
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.1e-155 552.7 373 74.3
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 7.2e-148 527.7 365 71.8
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.4e-143 513.5 374 69.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.0e-130 470.7 373 63.5
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.8e-130 469.9 375 64.5
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 8.8e-130 467.6 373 64.1
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.5e-129 466.8 378 64.3
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 9.1e-127 457.6 373 63.5
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.5e-126 455.7 376 60.1
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 4.5e-126 455.3 373 62.2
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 4.5e-126 455.3 373 61.4
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.0e-125 454.1 381 60.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.3e-125 453.8 377 61.8
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.9e-125 452.6 376 60.1
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.9e-125 452.6 379 60.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 5.0e-125 451.8 378 62.7
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 8.6e-125 451.1 374 62.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.1e-124 450.7 373 62.2
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-124 450.7 374 60.4
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 3.2e-124 449.1 372 61.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.2e-123 447.2 375 60.3
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.6e-123 446.8 372 61.8
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.8e-123 446.0 376 61.2
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 3.6e-123 445.7 373 61.4
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 6.1e-123 444.9 380 61.6
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.4e-122 443.7 375 61.6
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 2.3e-122 443.0 376 60.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.3e-122 443.0 381 62.2
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 4.0e-122 442.2 376 61.2
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 1.2e-121 440.7 376 60.9
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.5e-121 440.3 373 59.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.5e-121 440.3 375 61.6
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.0e-121 439.9 373 61.1
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 7.5e-121 438.0 380 60.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 9.8e-121 437.6 375 61.3
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 8.3e-120 434.5 379 59.6
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 8.3e-120 434.5 375 59.7
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.4e-119 433.0 373 60.3
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.1e-119 432.6 384 61.7
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 5.4e-119 431.8 373 60.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.2e-118 430.6 382 59.2
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.7e-118 429.5 374 59.4
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 5.9e-118 428.3 373 58.2
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 7.8e-118 427.9 364 60.7
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.0e-117 427.6 376 60.4
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.5e-116 422.9 373 60.9
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 3.3e-116 422.5 385 57.7
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 7.3e-116 421.4 378 60.1
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.6e-115 420.2 377 58.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.6e-115 420.2 379 56.5
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.6e-115 420.2 372 58.1
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 2.1e-115 419.9 383 58.2
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.8e-115 419.5 378 57.7
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.8e-115 419.5 373 59.8
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.7e-115 418.7 378 57.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 6.1e-115 418.3 374 57.0
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.0e-114 416.0 374 59.1
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.0e-114 416.0 378 57.1
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.2e-114 415.2 374 59.1
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 6.8e-114 414.8 373 57.6
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.8e-114 414.8 374 58.8
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.4e-113 412.5 374 58.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.4e-113 412.5 374 58.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 9.8e-113 411.0 374 57.8
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.3e-112 410.6 355 59.7
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.7e-112 410.2 374 58.3
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.4e-112 408.3 374 58.8
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 4.1e-111 405.6 377 56.2
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.2e-110 404.1 385 57.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.0e-110 403.3 378 55.6
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.3e-109 400.6 375 58.4
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.3e-109 400.6 377 56.2
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.7e-109 400.2 379 55.1
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 3.9e-109 399.1 377 56.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.6e-109 397.9 382 57.1
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.1e-108 397.5 378 55.3
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 4.3e-108 395.6 377 55.7
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 5.6e-108 395.2 375 55.5
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.3e-108 394.8 382 56.5
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 2.1e-107 393.3 378 55.3
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 2.1e-107 393.3 378 55.3
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.1e-107 393.3 356 56.2
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 2.8e-107 392.9 375 56.3
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 6.2e-107 391.7 378 55.0
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.8e-106 390.2 382 56.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 4.0e-106 389.0 378 54.8
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 6.8e-106 388.3 341 58.4
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.2e-105 387.5 341 58.4
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 3.4e-105 386.0 376 55.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.4e-103 380.6 376 53.7
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.2e-103 379.4 383 53.5
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.3e-101 373.2 363 54.8
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.1e-99 364.8 378 51.9
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.3e-96 357.5 365 51.5
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-93 347.1 374 51.9
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 3.6e-91 339.3 370 50.0
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.2e-89 334.3 461 41.6
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 8.7e-85 318.2 374 46.5
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.2e-83 314.3 182 80.2
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 4.0e-82 309.3 321 50.5
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.5e-81 307.4 374 47.1
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 7.1e-79 298.5 260 55.0
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.6e-76 288.9 379 43.0
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.8e-74 283.9 358 45.0
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.9e-72 276.6 374 43.0
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.1e-71 274.6 350 42.6
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.2e-71 273.1 353 44.2
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.0e-69 268.1 378 39.9
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 4.8e-67 259.2 225 61.3
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 6.9e-66 255.4 371 40.2
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.3e-56 224.6 199 57.8
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 3.0e-53 213.4 202 49.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.2e-46 191.4 252 42.9
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 3.3e-44 183.3 179 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.8e-42 177.6 242 40.9
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 4.2e-39 166.4 163 52.1
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.9e-37 159.8 132 59.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.7e-37 159.1 132 58.3
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.2e-35 154.1 290 30.7
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.8e-34 151.0 144 52.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.1e-34 148.7 139 54.7
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.7e-27 127.9 95 62.1
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 4.8e-27 126.3 95 62.1
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-26 125.2 95 60.0
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 5.3e-26 122.9 107 60.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.1e-26 122.1 95 58.9
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.5e-23 114.8 100 56.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 8.0e-22 109.0 272 28.3
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 7.5e-20 102.4 241 35.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 6.3e-19 99.4 111 45.0
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.3e-16 91.7 72 58.3
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 8.8e-13 79.0 90 57.8
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.2e-12 78.6 65 63.1
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.0e-12 77.8 65 63.1
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.7e-11 74.7 45 82.2
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.7e-11 74.7 59 64.4
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 5.4e-10 69.7 58 58.6
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.3e-08 64.3 103 37.9
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.3e-08 64.3 103 37.9
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 2.3e-08 64.3 80 42.5
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 5.5e-07 59.7 136 36.0


User provided reference genes

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