Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004642g0010 Nicotiana tabacum HOM05D016048 ORTHO05D022962 3.2e-40 167.9 83 100.0
Nitab4.5_0001759g0030 Nicotiana tabacum HOM05D000095 ORTHO05D000534 5.4e-11 70.9 39 84.6
Nitab4.5_0002224g0140 Nicotiana tabacum HOM05D000095 ORTHO05D000534 5.4e-11 70.9 39 84.6
Peaxi162Scf00303g00015 Petunia axillaris HOM05D000095 ORTHO05D000534 1.3e-09 66.2 39 74.4
PGSC0003DMG400003737 Solanum tuberosum HOM05D000095 ORTHO05D000534 1.7e-09 65.9 39 74.4
CAN.G1226.31 Capsicum annuum HOM05D000095 ORTHO05D000534 2.2e-09 65.5 39 74.4
CAN.G1226.32 Capsicum annuum HOM05D000095 ORTHO05D000534 2.2e-09 65.5 39 74.4
Solyc04g080500.3 Solanum lycopersicum HOM05D000095 ORTHO05D000534 2.2e-09 65.5 39 74.4
Sopen04g034090 Solanum pennellii HOM05D000095 ORTHO05D000534 2.2e-09 65.5 39 74.4
Peaxi162Scf00280g01014 Petunia axillaris HOM05D000095 ORTHO05D000534 2.9e-09 65.1 35 80.0
Nitab4.5_0002929g0020 Nicotiana tabacum HOM05D016048 ORTHO05D022962 5.0e-09 64.3 47 74.5
Solyc12g089190.1 Solanum lycopersicum HOM05D000095 ORTHO05D000534 5.0e-09 64.3 39 74.4
Sopen12g031070 Solanum pennellii HOM05D000095 ORTHO05D000534 5.0e-09 64.3 39 74.4
PGSC0003DMG400015461 Solanum tuberosum HOM05D000095 ORTHO05D000534 5.0e-09 64.3 39 74.4
Nitab4.5_0007370g0040 Nicotiana tabacum HOM05D016048 ORTHO05D022962 6.5e-09 63.9 47 70.2
Nitab4.5_0010683g0010 Nicotiana tabacum HOM05D000095 ORTHO05D000534 8.5e-09 63.5 39 71.8
Peaxi162Scf00064g00056 Petunia axillaris HOM05D000095 ORTHO05D000534 1.1e-08 63.2 39 71.8
Peaxi162Scf00280g00098 Petunia axillaris HOM05D000095 ORTHO05D000534 1.5e-08 62.8 39 71.8
CAN.G1675.3 Capsicum annuum HOM05D000095 ORTHO05D000534 5.5e-08 60.8 39 69.2
Migut.C00747 Erythranthe guttata HOM05D000095 ORTHO05D000534 5.5e-08 60.8 72 48.6
Nitab4.5_0006473g0020 Nicotiana tabacum HOM05D000145 ORTHO05D000115 1.6e-07 59.3 40 77.5
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.1e-07 58.9 34 73.5
Nitab4.5_0000017g0200 Nicotiana tabacum HOM05D000095 ORTHO05D000534 2.1e-07 58.9 39 66.7
MD15G1027000 Malus domestica HOM05D000095 ORTHO05D000534 2.7e-07 58.5 79 41.8
Nitab4.5_0001091g0060 Nicotiana tabacum HOM05D000095 ORTHO05D000534 2.7e-07 58.5 39 66.7
SGA_v2.0_scaffold201G41412 Striga asiatica HOM05D000095 ORTHO05D000534 2.7e-07 58.5 39 64.1
vmacro04533 Vaccinium macrocarpon HOM05D000095 ORTHO05D000534 2.7e-07 58.5 33 81.8
Medtr5g020540 Medicago truncatula HOM05D000095 ORTHO05D000534 3.6e-07 58.2 35 71.4
TPR.G21424 Trifolium pratense HOM05D000095 ORTHO05D000534 3.6e-07 58.2 35 71.4
Nitab4.5_0004802g0050 Nicotiana tabacum HOM05D000095 ORTHO05D000534 4.7e-07 57.8 39 66.7
AUR62016741 Chenopodium quinoa HOM05D000095 ORTHO05D000534 6.1e-07 57.4 36 75.0
Lsat_1_v5_gn_5_117861 Lactuca sativa HOM05D000095 ORTHO05D000534 6.1e-07 57.4 34 70.6
Nitab4.5_0004461g0040 Nicotiana tabacum HOM05D009415 ORTHO05D283244 6.1e-07 57.4 45 66.7
PSO170G2393 Papaver somniferum HOM05D000095 ORTHO05D000534 6.1e-07 57.4 37 67.6
PSO210G2868 Papaver somniferum HOM05D000095 ORTHO05D000534 6.1e-07 57.4 37 67.6
PGR042G3388 Punica granatum HOM05D000095 ORTHO05D000534 6.1e-07 57.4 43 65.1
MSTRG.1270 Avicennia marina HOM05D000095 ORTHO05D000534 8.0e-07 57.0 39 64.1
COL.COLO4_25943 Corchorus olitorius HOM05D000095 ORTHO05D000534 8.0e-07 57.0 34 70.6
ECA234G3872 Erigeron canadensis HOM05D000095 ORTHO05D000534 8.0e-07 57.0 53 52.8
FAN20G2270 Fragaria x ananassa HOM05D000095 ORTHO05D000534 8.0e-07 57.0 34 70.6
FAN27G0338 Fragaria x ananassa HOM05D000095 ORTHO05D000534 8.0e-07 57.0 34 70.6
Lsat_1_v5_gn_7_91221 Lactuca sativa HOM05D000095 ORTHO05D000534 8.0e-07 57.0 33 72.7
Prupe.1G378800 Prunus persica HOM05D000095 ORTHO05D000534 8.0e-07 57.0 34 70.6
RcHm_v2.0_Chr6g0301111 Rosa chinensis HOM05D000095 ORTHO05D000534 8.0e-07 57.0 34 70.6
PGSC0003DMG400019129 Solanum tuberosum HOM05D000095 ORTHO05D000330 8.0e-07 57.0 59 50.8
Duzib132G0075 Durio zibethinus HOM05D000095 ORTHO05D000534 1.0e-06 56.6 34 70.6
FvH4_2g39750 Fragaria vesca HOM05D000095 ORTHO05D000534 1.0e-06 56.6 34 70.6
Lj2g0000045 Lotus japonicus HOM05D000095 ORTHO05D000534 1.0e-06 56.6 36 75.0
MBI14_g40911_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 1.0e-06 56.6 62 46.8
Nitab4.5_0003257g0030 Nicotiana tabacum HOM05D005774 ORTHO05D022962 1.0e-06 56.6 40 67.5
Peaxi162Scf01405g00013 Petunia axillaris HOM05D000095 ORTHO05D000534 1.0e-06 56.6 31 80.6
Rhsim07G0240600 Rhododendron simsii HOM05D000095 ORTHO05D000534 1.0e-06 56.6 33 78.8
CARHR112640 Cardamine hirsuta HOM05D000095 ORTHO05D000534 1.4e-06 56.2 34 67.6
Dinv23515 Davidia involucrata HOM05D000095 ORTHO05D000534 1.4e-06 56.2 34 67.6
TAR636G1849 Trochodendron aralioides HOM05D000095 ORTHO05D000534 1.4e-06 56.2 35 65.7
Cfa018168 Carpinus fangiana HOM05D000095 ORTHO05D000534 1.8e-06 55.8 37 67.6
HanXRQChr05g0152711 Helianthus annuus HOM05D000095 ORTHO05D000534 1.8e-06 55.8 34 70.6
HanXRQChr16g0505951 Helianthus annuus HOM05D000095 ORTHO05D000534 1.8e-06 55.8 74 45.9
Oeu029837.1 Olea europaea HOM05D000095 ORTHO05D000534 1.8e-06 55.8 37 70.3
Psat2g158840 Pisum sativum HOM05D000095 ORTHO05D000534 1.8e-06 55.8 35 65.7
TPR.G24099 Trifolium pratense HOM05D000095 ORTHO05D000534 1.8e-06 55.8 33 72.7
AUR62011313 Chenopodium quinoa HOM05D000095 ORTHO05D000534 2.3e-06 55.5 36 72.2
Eucgr.I01273 Eucalyptus grandis HOM05D000095 ORTHO05D000534 2.3e-06 55.5 33 69.7
Psat0s1033g0080 Pisum sativum HOM05D000095 ORTHO05D000534 2.3e-06 55.5 33 72.7
SalBow5G4939 Salvia bowleyana HOM05D000095 ORTHO05D000330 2.3e-06 55.5 59 47.5
Aqoxy6G01119 Aquilegia oxysepala HOM05D000095 ORTHO05D000534 3.0e-06 55.1 31 74.2
BcaC03g15556 Brassica carinata HOM05D000095 ORTHO05D000534 3.0e-06 55.1 37 64.9
A02p19820 Brassica napus HOM05D000095 ORTHO05D000534 3.0e-06 55.1 74 45.9
C02p32440 Brassica napus HOM05D000095 ORTHO05D000534 3.0e-06 55.1 37 64.9
BraA02t07015Z Brassica rapa HOM05D000095 ORTHO05D000534 3.0e-06 55.1 74 45.9
CSS0031180 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000534 3.0e-06 55.1 34 64.7
DCAR_019534 Daucus carota HOM05D000095 ORTHO05D000534 3.0e-06 55.1 31 74.2
Dinv36093 Davidia involucrata HOM05D000095 ORTHO05D000534 3.0e-06 55.1 35 68.6
Lalb_Chr05g0212751 Lupinus albus HOM05D000095 ORTHO05D000534 3.0e-06 55.1 36 72.2
Lalb_Chr09g0322291 Lupinus albus HOM05D000095 ORTHO05D000534 3.0e-06 55.1 36 75.0
Phvul.001G014300 Phaseolus vulgaris HOM05D000095 ORTHO05D000534 3.0e-06 55.1 72 41.7
Phvul.009G058100 Phaseolus vulgaris HOM05D000095 ORTHO05D000534 3.0e-06 55.1 31 71.0
Sabra05G0100300 Salix brachista HOM05D000095 ORTHO05D000534 3.0e-06 55.1 37 64.9
Sc08g0000540 Simmondsia chinensis HOM05D000095 ORTHO05D000534 3.0e-06 55.1 55 50.9
SGA_v2.0_scaffold1971G54062 Striga asiatica HOM05D000095 ORTHO05D000534 3.0e-06 55.1 29 79.3
Atru.chr3.595 Acer truncatum HOM05D000095 ORTHO05D000534 4.0e-06 54.7 33 69.7
Atru.chr5.3023 Acer truncatum HOM05D000095 ORTHO05D000534 4.0e-06 54.7 34 67.6
Cpa.g.sc31.76 Carica papaya HOM05D000095 ORTHO05D000534 4.0e-06 54.7 35 71.4
ClCG02G004900 Citrullus lanatus HOM05D000095 ORTHO05D000534 4.0e-06 54.7 35 68.6
Dinv42061 Davidia involucrata HOM05D000095 ORTHO05D000534 4.0e-06 54.7 34 67.6
ECA236G2836 Erigeron canadensis HOM05D000095 ORTHO05D000534 4.0e-06 54.7 33 69.7
Migut.N00487 Erythranthe guttata HOM05D000095 ORTHO05D000534 4.0e-06 54.7 72 47.2
Lj4g0021210 Lotus japonicus HOM05D000095 ORTHO05D000534 4.0e-06 54.7 36 72.2
Nn5g29637 Nelumbo nucifera HOM05D000095 ORTHO05D000534 4.0e-06 54.7 37 64.9
Nitab4.5_0011729g0030 Nicotiana tabacum HOM05D000095 ORTHO05D000534 4.0e-06 54.7 34 67.6
Potri.005G122200 Populus trichocarpa HOM05D000095 ORTHO05D000534 4.0e-06 54.7 37 64.9
Sabra07G0020700 Salix brachista HOM05D000095 ORTHO05D349595 4.0e-06 54.7 37 64.9
SalBow7G0428 Salvia bowleyana HOM05D000095 ORTHO05D000534 4.0e-06 54.7 37 64.9
THA.LOC104813825 Tarenaya hassleriana HOM05D000095 ORTHO05D000534 4.0e-06 54.7 31 71.0
TWI09G0428 Tripterygium wilfordii HOM05D000095 ORTHO05D000534 4.0e-06 54.7 33 69.7
TWI73G0901 Tripterygium wilfordii HOM05D000095 ORTHO05D000534 4.0e-06 54.7 33 69.7
TWI79G0302 Tripterygium wilfordii HOM05D000095 ORTHO05D000534 4.0e-06 54.7 34 64.7
Zm00001eb296840 Zea mays HOM05D000095 ORTHO05D000534 4.0e-06 54.7 31 74.2
Aqoxy5G01602 Aquilegia oxysepala HOM05D000095 ORTHO05D000534 5.2e-06 54.3 31 71.0
Aqoxy6G01130 Aquilegia oxysepala HOM05D000095 ORTHO05D000534 5.2e-06 54.3 53 50.9
AL4G10850 Arabidopsis lyrata HOM05D000095 ORTHO05D000534 5.2e-06 54.3 34 67.6
AT2G21650 Arabidopsis thaliana HOM05D000095 ORTHO05D000534 5.2e-06 54.3 34 64.7
Lj2g0006304 Lotus japonicus HOM05D000095 ORTHO05D000534 5.2e-06 54.3 31 74.2
Lalb_Chr24g0398951 Lupinus albus HOM05D000095 ORTHO05D000534 5.2e-06 54.3 33 69.7
Medtr8g077360 Medicago truncatula HOM05D000095 ORTHO05D000534 5.2e-06 54.3 33 69.7
Medtr8g077380 Medicago truncatula HOM05D000095 ORTHO05D000534 5.2e-06 54.3 33 69.7
Medtr8g077390 Medicago truncatula HOM05D000095 ORTHO05D000534 5.2e-06 54.3 33 69.7
Nitab4.5_0000119g0220 Nicotiana tabacum HOM05D000095 ORTHO05D000330 5.2e-06 54.3 59 44.1
Oeu029838.1 Olea europaea HOM05D000095 ORTHO05D000534 5.2e-06 54.3 37 67.6
Peaxi162Scf00016g00729 Petunia axillaris HOM05D000095 ORTHO05D000534 5.2e-06 54.3 35 65.7
Potri.004G155400 Populus trichocarpa HOM05D000095 ORTHO05D000534 5.2e-06 54.3 34 64.7
TAR376G0428 Trochodendron aralioides HOM05D000095 ORTHO05D000534 5.2e-06 54.3 68 41.2
VMungo0647G0240 Vigna mungo HOM05D000095 ORTHO05D000534 5.2e-06 54.3 31 71.0
CANSAT64G1477 Cannabis sativa HOM05D000095 ORTHO05D000534 6.8e-06 53.9 34 64.7
Cpa.g.sc62.157 Carica papaya HOM05D000095 ORTHO05D000534 6.8e-06 53.9 34 64.7
COL.COLO4_25938 Corchorus olitorius HOM05D000095 ORTHO05D000534 6.8e-06 53.9 34 64.7
DCAR_021487 Daucus carota HOM05D000095 ORTHO05D000534 6.8e-06 53.9 35 68.6
DCAR_022977 Daucus carota HOM05D000095 ORTHO05D000534 6.8e-06 53.9 34 64.7
HanXRQChr09g0269271 Helianthus annuus HOM05D000095 ORTHO05D000534 6.8e-06 53.9 35 65.7
Lsat_1_v5_gn_4_118501 Lactuca sativa HOM05D000095 ORTHO05D000534 6.8e-06 53.9 39 66.7
PGR142G2707 Punica granatum HOM05D000095 ORTHO05D000534 6.8e-06 53.9 33 69.7
Rhsim06G0032200 Rhododendron simsii HOM05D000095 ORTHO05D000534 6.8e-06 53.9 37 64.9
Rhsim11G0177900 Rhododendron simsii HOM05D000095 ORTHO05D000534 6.8e-06 53.9 34 67.6
Sc15g0007020 Simmondsia chinensis HOM05D000095 ORTHO05D000534 6.8e-06 53.9 31 71.0
TAR625G0351 Trochodendron aralioides HOM05D000095 ORTHO05D000534 6.8e-06 53.9 31 67.7
MSTRG.22303 Avicennia marina HOM05D000095 ORTHO05D000534 8.8e-06 53.5 32 71.9
BcaB03g12911 Brassica carinata HOM05D000095 ORTHO05D000534 8.8e-06 53.5 33 66.7
BcaC08g45587 Brassica carinata HOM05D000095 ORTHO05D000534 8.8e-06 53.5 37 62.2
CSS0035656 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 67.6
Cc10_g02730 Coffea canephora HOM05D000095 ORTHO05D000534 8.8e-06 53.5 33 69.7
Dinv39422 Davidia involucrata HOM05D000095 ORTHO05D000534 8.8e-06 53.5 38 63.2
Duzib041G0194 Durio zibethinus HOM05D000095 ORTHO05D000534 8.8e-06 53.5 65 43.1
Duzib093G1019 Durio zibethinus HOM05D000095 ORTHO05D000534 8.8e-06 53.5 65 41.5
Duzib132G1060 Durio zibethinus HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
Duzib248G1453 Durio zibethinus HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
ECA232G1733 Erigeron canadensis HOM05D001813 ORTHO05D004073 8.8e-06 53.5 35 71.4
Gohir.A01G004800 Gossypium hirsutum HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
Gohir.A13G033900 Gossypium hirsutum HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
Gohir.D13G032200 Gossypium hirsutum HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
Gorai.013G036700 Gossypium raimondii HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
HanXRQChr01g0020591 Helianthus annuus HOM05D000095 ORTHO05D000330 8.8e-06 53.5 30 70.0
Nitab4.5_0007025g0030 Nicotiana tabacum HOM05D000095 ORTHO05D000330 8.8e-06 53.5 59 44.1
Os05g0579600 Oryza sativa ssp. japonica HOM05D000095 ORTHO05D000534 8.8e-06 53.5 29 75.9
Psat4g094120 Pisum sativum HOM05D000095 ORTHO05D000534 8.8e-06 53.5 36 69.4
PGR142G1674 Punica granatum HOM05D000095 ORTHO05D000534 8.8e-06 53.5 33 66.7
Rhsim06G0128900 Rhododendron simsii HOM05D000095 ORTHO05D338538 8.8e-06 53.5 37 64.9
Thecc.02G084600 Theobroma cacao HOM05D000095 ORTHO05D000534 8.8e-06 53.5 34 64.7
unitig_27.g24824 Utricularia gibba HOM05D000095 ORTHO05D000330 8.8e-06 53.5 66 40.9
GSVIVG01031975001 Vitis vinifera HOM05D000095 ORTHO05D000534 8.8e-06 53.5 35 68.6


User provided reference genes

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