Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.8e-84 315.8 159 100.0
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.9e-29 132.5 73 87.7
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 4.9e-29 131.7 73 87.7
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 4.7e-24 115.2 73 80.8
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 1.8e-23 113.2 79 73.4
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 3.8e-21 105.5 73 74.0
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 8.7e-18 94.4 90 52.2
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 4.3e-17 92.0 50 86.0
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 5.6e-17 91.7 72 62.5
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 9.6e-17 90.9 72 56.9
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 1.3e-16 90.5 74 55.4
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 1.3e-16 90.5 71 54.9
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 2.1e-16 89.7 84 50.0
Nitab4.5_0000362g0120 Nicotiana tabacum HOM05D009415 ORTHO05D285732 6.2e-16 88.2 53 83.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 8.1e-16 87.8 84 51.2
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.1e-15 87.4 72 54.2
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 1.1e-15 87.4 74 52.7
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 1.4e-15 87.0 73 53.4
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.8e-15 86.7 91 47.3
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 3.1e-15 85.9 79 50.6
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 1.2e-14 84.0 91 45.1
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 1.5e-14 83.6 82 48.8
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 1.5e-14 83.6 66 54.5
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 2.0e-14 83.2 84 47.6
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 2.0e-14 83.2 69 52.2
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 2.6e-14 82.8 83 47.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 2.6e-14 82.8 84 47.6
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 2.6e-14 82.8 84 47.6
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 7.6e-14 81.3 72 52.8
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 1.3e-13 80.5 75 54.7
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 6.4e-13 78.2 68 51.5
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 3.2e-12 75.9 70 47.1
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 4.2e-12 75.5 91 42.9
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 5.4e-12 75.1 72 47.2
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.4e-12 75.1 91 42.9
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.4e-12 75.1 92 43.5
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 9.3e-12 74.3 68 51.5
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.2e-11 73.9 65 49.2
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 1.2e-11 73.9 88 40.9
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 1.6e-11 73.6 64 50.0
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 1.6e-11 73.6 65 49.2
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 2.1e-11 73.2 69 47.8
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 2.1e-11 73.2 69 47.8
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 2.1e-11 73.2 76 44.7
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 2.1e-11 73.2 65 47.7
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 2.1e-11 73.2 68 50.0
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 2.7e-11 72.8 66 51.5
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 2.7e-11 72.8 95 40.0
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 3.5e-11 72.4 47 66.0
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 3.5e-11 72.4 82 41.5
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 4.6e-11 72.0 64 54.7
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 4.6e-11 72.0 72 43.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 6.0e-11 71.6 69 47.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 6.0e-11 71.6 88 42.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 6.0e-11 71.6 88 42.0
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 6.0e-11 71.6 91 41.8
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 6.0e-11 71.6 91 41.8
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 7.9e-11 71.2 65 46.2
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 7.9e-11 71.2 82 46.3
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 7.9e-11 71.2 84 39.3
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 1.0e-10 70.9 71 46.5
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 1.3e-10 70.5 88 44.3
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 1.3e-10 70.5 68 45.6
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 1.7e-10 70.1 75 45.3
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 1.7e-10 70.1 74 45.9
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 2.3e-10 69.7 71 43.7
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 6.6e-10 68.2 70 44.3
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 8.7e-10 67.8 76 46.1
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 8.7e-10 67.8 59 49.2
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 1.1e-09 67.4 65 43.1
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 1.5e-09 67.0 71 43.7
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.9e-09 66.6 71 43.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 2.5e-09 66.2 71 42.3
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 5.6e-09 65.1 71 42.3
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.6e-08 63.5 93 37.6
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 2.8e-08 62.8 70 42.9
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 3.6e-08 62.4 87 37.9
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 6.2e-08 61.6 65 44.6
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 6.2e-08 61.6 85 40.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 6.2e-08 61.6 85 38.8
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 8.1e-08 61.2 76 42.1
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 6.9e-07 58.2 65 44.6
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 7.6e-06 54.7 74 36.5
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 7.6e-06 54.7 77 36.4


User provided reference genes

Program Settings