Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.3e-42 176.0 90 100.0
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.6e-21 105.9 91 67.0
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.8e-21 105.1 91 67.0
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 6.2e-21 104.0 91 67.0
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 8.9e-20 100.1 77 68.8
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 7.6e-19 97.1 87 70.1
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.3e-18 96.3 84 66.7
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.5e-14 82.0 84 57.1
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 7.3e-14 80.5 88 55.7
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 9.6e-14 80.1 79 57.0
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 9.6e-14 80.1 79 57.0
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.1e-13 79.0 77 53.2
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.1e-13 79.0 80 62.5
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 2.1e-13 79.0 78 55.1
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.8e-13 78.6 92 51.1
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 3.6e-13 78.2 84 52.4
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 3.6e-13 78.2 85 52.9
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 1.1e-12 76.6 83 54.2
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.4e-12 76.3 83 59.0
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 1.8e-12 75.9 78 52.6
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.4e-12 75.5 74 58.1
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 4.0e-12 74.7 77 55.8
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 4.0e-12 74.7 92 51.1
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 4.0e-12 74.7 84 53.6
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.2e-11 73.2 84 52.4
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.2e-11 73.2 81 53.1
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.0e-11 72.4 84 52.4
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 2.0e-11 72.4 80 55.0
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 2.0e-11 72.4 85 54.1
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.6e-11 72.0 78 50.0
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 2.6e-11 72.0 79 53.2
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 4.4e-11 71.2 81 53.1
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.4e-11 71.2 77 58.4
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 4.4e-11 71.2 77 58.4
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 7.6e-11 70.5 91 53.8
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 9.9e-11 70.1 91 52.7
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.3e-10 69.7 81 49.4
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.3e-10 69.7 80 53.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.3e-10 69.7 94 44.7
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.3e-10 69.7 80 51.2
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 1.3e-10 69.7 85 50.6
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 2.2e-10 68.9 91 46.2
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.9e-10 68.6 82 51.2
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 2.9e-10 68.6 84 54.8
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.9e-10 68.6 92 48.9
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.8e-10 68.2 83 47.0
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 6.4e-10 67.4 91 47.3
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 6.4e-10 67.4 71 56.3
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.4e-10 67.4 80 51.2
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 6.4e-10 67.4 75 49.3
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.4e-10 67.0 72 58.3
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 3.2e-09 65.1 48 66.7
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 3.2e-09 65.1 48 66.7
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 3.2e-09 65.1 75 52.0
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 4.2e-09 64.7 80 50.0
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 5.4e-09 64.3 89 46.1
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 9.3e-09 63.5 82 52.4
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.2e-08 63.2 89 46.1
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.7e-08 62.0 81 45.7
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 3.5e-08 61.6 86 46.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 3.5e-08 61.6 48 62.5
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 4.6e-08 61.2 88 45.5
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 4.6e-08 61.2 82 50.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 6.0e-08 60.8 82 48.8
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 7.8e-08 60.5 79 48.1
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.3e-07 59.7 89 46.1
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 1.3e-07 59.7 83 49.4
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.3e-07 58.9 94 44.7
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 3.0e-07 58.5 76 46.1
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 6.6e-07 57.4 77 44.2
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 8.7e-07 57.0 79 46.8
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 1.1e-06 56.6 61 50.8
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 1.5e-06 56.2 91 42.9
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.5e-06 56.2 81 45.7
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 1.9e-06 55.8 76 48.7
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.9e-06 55.8 80 42.5
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.9e-06 55.8 84 44.0
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.9e-06 55.8 80 47.5
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 2.5e-06 55.5 47 61.7
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 3.3e-06 55.1 81 45.7
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 7.3e-06 53.9 85 43.5
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 9.6e-06 53.5 61 50.8
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 9.6e-06 53.5 80 46.2


User provided reference genes

Program Settings