Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1581.2 773 100.0
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1522.3 772 96.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1427.2 773 90.2
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1421.0 773 89.8
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1412.9 773 89.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1400.2 773 89.0
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1394.4 775 88.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1249.2 775 79.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1220.7 775 76.5
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1214.1 773 77.4
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1209.5 777 76.8
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1207.2 777 76.7
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1180.2 763 76.1
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1179.1 792 74.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1176.0 777 74.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1165.6 804 72.9
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1162.1 779 73.6
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1162.1 787 73.3
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1148.7 773 73.9
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1145.6 777 73.2
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1135.9 772 73.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1135.9 782 72.8
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1129.8 773 73.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1124.8 783 71.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1124.0 774 71.6
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1120.5 774 70.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1115.9 772 72.3
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1113.2 770 71.4
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1111.7 772 72.3
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1109.4 771 70.4
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1107.4 770 71.2
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1104.0 774 71.3
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1102.4 773 70.1
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 776 70.6
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 783 71.0
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 774 70.5
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1092.4 773 70.8
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1091.3 773 70.9
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1090.1 773 70.4
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 775 70.1
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1088.6 772 71.1
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 772 71.6
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1085.9 774 69.8
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1085.1 773 70.2
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1083.9 774 70.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 779 69.8
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 773 70.5
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 772 70.9
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1078.9 775 69.4
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1078.5 778 70.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1076.6 775 69.7
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 763 70.9
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.6e-311 1072.4 775 69.0
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.6e-311 1072.4 775 69.0
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.1e-311 1072.0 775 69.0
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.2e-310 1067.4 775 68.8
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 8.3e-308 1060.1 777 69.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.9e-307 1058.9 772 68.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 9.2e-307 1056.6 773 69.6
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.1e-306 1055.4 775 67.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.6e-306 1054.3 775 67.4
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 772 68.4
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.3e-305 1052.0 780 68.7
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.0e-305 1051.6 772 68.7
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.1e-305 1050.8 775 67.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.9e-304 1048.9 776 68.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 771 68.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.6e-303 1044.6 774 69.4
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 6.2e-303 1043.9 772 67.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 3.0e-297 1025.0 777 66.4
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 8.6e-297 1023.5 775 66.3
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.9e-296 1022.3 772 67.7
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.5e-296 1021.9 780 65.5
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 9.6e-296 1020.0 779 66.9
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 773 64.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 3.6e-295 1018.1 776 66.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 776 67.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 775 65.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.2e-294 1014.2 778 65.6
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 6.9e-294 1013.8 777 66.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 776 66.4
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.2e-292 1008.8 774 64.7
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.8e-292 1008.1 778 65.6
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.9e-292 1007.7 804 63.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 6.4e-292 1007.3 772 66.1
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 777 66.3
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.5e-290 1001.5 773 66.1
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 780 65.8
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.8e-287 991.9 805 62.6
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.8e-287 991.9 831 61.5
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 3.6e-287 991.5 783 64.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 4.8e-287 991.1 775 64.4
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.4e-286 989.6 784 62.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.8e-286 989.2 777 64.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.0e-286 988.0 780 63.3
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.6e-285 985.3 743 68.9
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 7.6e-285 983.8 781 62.1
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.7e-284 982.6 781 64.8
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.1e-283 979.9 781 64.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.3e-281 973.0 773 63.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.3e-281 973.0 773 63.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 8.7e-281 970.3 721 68.9
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-280 969.9 773 63.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.5e-280 969.5 762 65.5
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 4.8e-279 964.5 771 63.8
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 4.8e-279 964.5 775 62.7
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 4.8e-279 964.5 772 62.7
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 6.2e-279 964.1 772 62.7
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.2e-279 964.1 779 63.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.1e-278 963.4 776 61.6
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 2.4e-278 962.2 773 62.4
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 3.1e-278 961.8 779 61.4
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 5.3e-278 961.1 773 62.5
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.0e-277 959.1 777 62.7
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-276 956.4 779 63.2
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.4e-275 953.0 759 63.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.6e-274 949.5 775 63.9
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 6.0e-274 947.6 775 61.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 5.1e-273 944.5 774 61.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.1e-272 943.3 774 61.6
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.9e-272 942.6 775 61.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.4e-269 931.8 778 60.9
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.9e-268 927.9 785 62.7
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.5e-268 927.5 776 61.0
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.2e-267 924.9 773 62.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 7.9e-266 920.6 732 66.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 5.1e-265 917.9 789 59.7
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.9e-264 916.0 880 57.8
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 2.2e-263 912.5 778 60.3
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.0e-261 906.0 777 59.7
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.3e-255 884.4 775 57.8
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 8.2e-255 884.0 768 60.8
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.8e-244 848.6 778 58.9
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-243 847.0 778 58.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.4e-243 844.0 768 58.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 5.5e-235 818.1 707 62.4
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.3e-223 780.4 685 60.0
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.5e-221 771.9 740 55.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 3.0e-196 689.5 773 49.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.2e-190 667.9 760 47.8
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.9e-179 633.6 764 45.8
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.5e-173 612.8 796 43.7
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.3e-172 610.9 796 44.6
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 8.7e-172 608.2 772 43.4
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.9e-167 593.2 443 65.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.0e-164 584.7 418 69.4
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.9e-163 580.5 403 71.7
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.4e-160 569.7 391 71.9
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.4e-160 569.7 391 71.9
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 4.2e-158 562.8 791 41.3
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 4.8e-138 496.1 272 85.7
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.7e-135 487.6 554 47.3
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.0e-129 465.7 455 55.4
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.6e-117 426.8 256 80.1
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-116 424.9 466 47.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.1e-102 378.6 745 36.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-81 307.4 274 57.7
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.9e-74 284.3 754 29.7
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 3.4e-67 260.8 288 50.7
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.6e-56 225.3 194 58.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.7e-47 193.4 142 66.2
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.6e-40 170.6 149 59.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-37 161.4 83 81.9
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.7e-29 134.4 65 86.2
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.2e-25 120.9 172 38.4
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-22 112.8 142 38.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.9e-17 95.5 73 60.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.4e-12 78.6 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.6e-11 75.1 108 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.9e-10 71.6 66 51.5
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.1e-09 69.7 101 39.6


User provided reference genes

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