Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 2.7e-80 302.0 158 100.0
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 8.5e-50 200.7 161 73.3
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 4.7e-32 141.7 158 51.3
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.4e-30 135.6 154 50.0
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.9e-21 105.1 155 43.2
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.1e-20 102.1 156 42.3
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.3e-18 97.1 139 51.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.0e-18 95.1 157 42.0
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.2e-16 90.5 160 40.6
Sopen10g029100 Solanum pennellii HOM05D015198 ORTHO05D002992 1.4e-15 87.0 131 44.3
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 5.2e-15 85.1 164 42.1
CAN.G960.58 Capsicum annuum HOM05D015198 ORTHO05D002992 6.8e-15 84.7 130 47.7
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 9.8e-14 80.9 153 37.9
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.9e-13 79.3 151 40.4
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.3e-13 77.8 54 68.5
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.1e-12 77.4 161 36.0
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-12 76.3 139 39.6
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.2e-12 75.9 146 37.7
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.2e-12 75.9 156 35.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 4.1e-12 75.5 57 68.4
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.2e-11 73.9 151 35.8
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.7e-11 72.8 153 35.9
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.7e-11 72.8 57 63.2
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.7e-11 72.8 57 63.2
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.6e-11 72.0 54 68.5
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.0e-10 69.3 155 32.9
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 5.1e-10 68.6 151 36.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.1e-10 68.6 54 70.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.6e-10 68.2 59 61.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 8.6e-10 67.8 59 61.0
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 8.6e-10 67.8 152 32.9
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 8.6e-10 67.8 152 36.2
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 8.6e-10 67.8 158 34.2
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.1e-09 67.4 160 34.4
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.1e-09 67.4 146 34.9
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.1e-09 67.4 66 57.6
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-09 66.6 53 64.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.9e-09 66.6 158 34.2
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.9e-09 66.6 159 31.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.5e-09 66.2 158 35.4
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.5e-09 66.2 54 66.7
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 4.3e-09 65.5 168 32.1
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 5.6e-09 65.1 86 44.2
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 5.6e-09 65.1 52 63.5
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 5.6e-09 65.1 165 33.9
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 7.3e-09 64.7 47 74.5
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 9.5e-09 64.3 56 66.1
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.2e-08 63.9 56 62.5
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 1.6e-08 63.5 56 55.4
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.1e-08 63.2 42 71.4
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 2.8e-08 62.8 39 76.9
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-08 62.8 39 76.9
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.8e-08 62.8 44 70.5
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.6e-08 62.4 43 72.1
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.7e-08 62.0 56 60.7
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 4.7e-08 62.0 51 62.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 6.2e-08 61.6 54 61.1
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 8.1e-08 61.2 43 67.4
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 8.1e-08 61.2 151 35.1
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.1e-07 60.8 167 33.5
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.1e-07 60.8 54 64.8
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.4e-07 60.5 73 52.1
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.4e-07 60.5 141 36.2
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 1.4e-07 60.5 47 63.8
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.8e-07 60.1 39 71.8
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.3e-07 59.7 39 74.4
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 3.1e-07 59.3 156 35.3
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 3.1e-07 59.3 81 46.9
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 4.0e-07 58.9 81 46.9
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.2e-07 58.5 67 50.7
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 6.8e-07 58.2 45 71.1
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 1.5e-06 57.0 51 56.9
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 1.5e-06 57.0 46 67.4
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 1.5e-06 57.0 46 67.4
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 1.5e-06 57.0 38 71.1
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 1.5e-06 57.0 38 71.1
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 2.0e-06 56.6 42 66.7
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.6e-06 56.2 34 79.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 3.4e-06 55.8 55 56.4
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 3.4e-06 55.8 33 78.8
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 4.4e-06 55.5 53 60.4
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 4.4e-06 55.5 48 62.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.4e-06 55.5 41 65.9
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.4e-06 55.5 57 50.9
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.4e-06 55.5 50 62.0
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 38 73.7
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 50 58.0
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.4e-06 55.5 46 65.2
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 5.8e-06 55.1 46 63.0
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 5.8e-06 55.1 94 35.1
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.8e-06 55.1 94 35.1
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.8e-06 55.1 50 60.0
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.8e-06 55.1 50 60.0
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 5.8e-06 55.1 34 79.4
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.6e-06 54.7 68 48.5
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.6e-06 54.7 72 48.6
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 7.6e-06 54.7 51 54.9
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.6e-06 54.7 134 30.6
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 9.9e-06 54.3 77 44.2
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 9.9e-06 54.3 157 31.2
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.9e-06 54.3 64 45.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 9.9e-06 54.3 51 56.9
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 9.9e-06 54.3 51 56.9
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 9.9e-06 54.3 50 60.0


User provided reference genes

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