Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.7e-178 629.4 355 100.0
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 1.1e-142 510.4 379 79.9
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 4.7e-141 505.0 379 80.7
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 4.7e-141 505.0 379 80.7
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 6.4e-138 494.6 380 80.0
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 8.7e-135 484.2 353 83.9
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 3.9e-127 458.8 378 71.4
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 4.3e-126 455.3 379 72.6
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 1.8e-124 449.9 379 69.7
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.8e-124 449.9 379 67.8
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 6.9e-124 448.0 379 70.4
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 2.6e-123 446.0 379 70.2
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 2.6e-123 446.0 379 71.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 5.8e-123 444.9 379 69.4
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 4.9e-122 441.8 380 68.2
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 8.4e-122 441.0 379 67.8
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 8.4e-122 441.0 379 67.8
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.1e-121 440.7 379 66.8
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.2e-121 438.7 379 67.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.2e-121 438.7 379 67.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 5.5e-121 438.3 379 66.5
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.7e-120 436.0 380 69.7
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 2.7e-120 436.0 379 66.0
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 3.5e-120 435.6 380 70.0
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 3.5e-120 435.6 379 66.2
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 6.0e-120 434.9 379 68.9
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 7.9e-120 434.5 379 65.4
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.0e-119 434.1 379 67.0
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 2.3e-119 433.0 379 69.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 3.9e-119 432.2 379 67.5
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 3.9e-119 432.2 379 68.3
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 5.1e-119 431.8 379 69.1
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 5.1e-119 431.8 379 66.2
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.7e-119 431.4 373 66.8
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 6.7e-119 431.4 379 66.0
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 6.7e-119 431.4 379 65.7
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 8.7e-119 431.0 381 66.7
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 8.7e-119 431.0 378 66.4
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 8.7e-119 431.0 379 70.2
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.5e-118 430.3 379 71.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 7.4e-118 427.9 379 65.4
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 7.4e-118 427.9 380 66.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 7.4e-118 427.9 379 69.9
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.3e-117 427.2 362 71.3
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.3e-117 427.2 379 66.2
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 1.6e-117 426.8 379 64.6
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.1e-117 426.4 379 69.9
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.8e-117 426.0 379 65.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 2.8e-117 426.0 379 69.1
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 2.8e-117 426.0 379 70.4
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.2e-117 424.5 379 64.9
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 8.2e-117 424.5 381 69.0
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 8.2e-117 424.5 375 65.6
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 1.1e-116 424.1 362 72.1
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.4e-116 422.9 381 68.8
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 4.0e-116 422.2 379 67.8
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 9.0e-116 421.0 379 68.3
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 4.5e-115 418.7 365 70.1
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 5.8e-115 418.3 379 67.0
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.3e-114 417.2 380 64.5
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 4.9e-114 415.2 379 66.8
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.1e-113 414.1 379 68.9
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.1e-113 414.1 379 63.1
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.1e-112 409.8 358 65.4
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 6.1e-112 408.3 379 66.2
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 7.9e-112 407.9 380 66.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.9e-112 407.9 383 65.5
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.3e-111 406.4 380 65.3
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.0e-111 406.0 358 65.9
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 8.7e-111 404.4 380 65.3
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 8.7e-111 404.4 380 64.2
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.1e-110 404.1 380 64.7
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.5e-110 403.7 380 65.3
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.5e-110 402.9 380 65.3
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.8e-109 399.4 379 65.7
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.3e-109 398.3 380 61.3
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 8.2e-109 397.9 380 64.2
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.1e-108 397.5 402 60.7
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.1e-108 397.5 379 66.0
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.4e-108 397.1 379 65.2
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.1e-108 396.0 376 68.4
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 6.9e-108 394.8 365 66.0
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 6.9e-108 394.8 358 66.5
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 6.9e-108 394.8 374 64.4
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 6.9e-108 394.8 378 68.3
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 9.0e-108 394.4 363 64.2
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-107 394.0 357 66.7
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-107 393.3 369 66.7
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.0e-106 391.0 363 66.1
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.7e-106 390.2 381 64.3
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 6.5e-106 388.3 379 63.3
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.5e-105 386.3 379 62.8
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.5e-105 386.3 379 64.4
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.2e-105 386.0 380 60.8
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.2e-105 385.6 374 67.4
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 9.4e-105 384.4 380 60.0
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 4.6e-104 382.1 379 60.7
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.3e-103 379.8 379 63.6
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 3.9e-103 379.0 354 70.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 6.7e-103 378.3 382 59.2
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.8e-101 372.9 370 62.2
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.8e-101 372.1 348 65.8
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-100 370.9 346 65.9
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.1e-100 370.9 346 65.9
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.1e-100 370.9 346 61.6
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 3.1e-100 369.4 346 64.7
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 6.9e-100 368.2 346 64.5
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 9.1e-100 367.9 360 66.4
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.2e-99 367.5 378 59.0
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 2.0e-99 366.7 342 67.0
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.3e-98 364.0 370 60.5
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.1e-97 360.9 341 60.4
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 4.2e-97 359.0 370 58.9
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 7.2e-97 358.2 283 75.6
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.7e-93 347.1 356 57.0
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.8e-93 346.3 357 63.0
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.1e-92 342.8 370 57.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.7e-90 337.0 354 57.1
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 2.2e-90 336.7 275 77.8
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.8e-90 335.9 347 61.4
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-85 320.5 353 53.5
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.1e-84 315.8 315 61.3
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 2.9e-82 309.7 294 61.9
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 3.2e-81 306.2 259 68.7
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.7e-80 302.4 353 50.1
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.8e-79 300.4 353 51.6
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-76 291.2 314 58.0
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.1e-76 289.7 334 59.0
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 3.1e-76 289.7 278 61.2
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.1e-76 289.3 353 49.9
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 7.7e-75 285.0 314 52.2
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 3.8e-74 282.7 359 48.2
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.1e-73 281.2 340 48.8
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 4.2e-73 279.3 356 53.1
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.6e-72 276.2 359 47.9
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.2e-70 271.2 223 71.7
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.0e-70 270.4 227 69.2
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 2.4e-68 263.5 203 74.9
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-44 184.9 160 66.9
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.0e-39 166.4 102 88.2
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.9e-37 160.2 102 86.3
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 8.3e-37 158.7 102 81.4
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 8.6e-34 148.7 102 79.4
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 2.5e-33 147.1 171 57.3
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.4e-31 141.4 94 78.7
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.6e-27 126.3 101 69.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.4e-22 110.2 106 54.7
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 5.8e-22 109.4 97 57.7
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 4.9e-21 106.3 97 56.7
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 3.3e-17 93.6 58 91.4
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.3e-16 91.7 81 65.4
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.1e-16 90.9 104 44.2
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.5e-14 84.7 81 60.5
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 4.2e-12 76.6 54 75.9
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 2.3e-10 70.9 47 68.1
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.6e-08 64.7 102 44.1
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 3.7e-08 63.5 75 50.7
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.4e-07 61.6 38 92.1
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.8e-07 61.2 89 48.3
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 4.0e-07 60.1 38 89.5
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 9.0e-07 58.9 43 76.7


User provided reference genes

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