Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.8e-275 950.3 482 100.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.7e-231 803.9 513 82.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 3.5e-219 765.0 514 79.0
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.0e-218 763.5 514 78.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.9e-218 761.9 513 78.0
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.2e-217 758.1 514 78.2
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.2e-196 687.2 513 74.7
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.7e-181 638.6 512 67.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.1e-180 635.2 508 66.7
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.3e-178 629.4 507 66.1
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.3e-177 625.5 511 66.3
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 4.7e-176 621.7 509 65.0
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.8e-175 619.8 501 70.1
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.0e-175 618.6 501 67.7
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.2e-174 617.1 513 65.1
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.5e-174 616.7 501 65.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.9e-172 609.8 500 65.6
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 4.1e-172 608.6 499 65.1
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.1e-172 608.6 520 64.0
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 7.1e-172 607.8 509 63.9
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.2e-171 607.1 503 65.4
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.6e-171 606.7 496 66.7
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.5e-171 605.5 511 65.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 6.0e-171 604.7 503 64.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 6.0e-171 604.7 509 63.5
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.7e-170 603.2 505 64.6
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.3e-170 602.8 497 65.2
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.5e-169 600.1 507 63.7
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.9e-169 599.7 508 64.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.3e-169 599.0 507 63.7
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 5.6e-169 598.2 506 64.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.7e-168 595.1 504 64.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 6.2e-168 594.7 505 64.2
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 8.1e-168 594.3 503 63.2
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 8.1e-168 594.3 514 62.6
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-167 594.0 504 63.9
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-167 594.0 503 64.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-167 594.0 503 64.0
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.1e-167 594.0 509 63.5
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.1e-167 594.0 504 63.9
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.1e-167 592.4 505 64.0
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 3.1e-167 592.4 509 63.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.1e-167 592.4 509 63.7
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.8e-167 591.3 511 62.8
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.8e-167 591.3 489 65.2
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.8e-167 591.3 512 63.5
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.8e-167 591.3 512 63.5
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 8.9e-167 590.9 494 64.2
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.2e-166 590.5 496 64.1
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.5e-166 590.1 505 63.4
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.4e-166 589.0 503 63.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.4e-166 589.0 505 63.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.4e-166 589.0 522 61.9
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 5.8e-166 588.2 504 63.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.8e-166 588.2 497 64.0
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 5.8e-166 588.2 507 62.7
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.7e-165 586.6 494 64.0
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.7e-165 586.6 505 63.0
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.2e-165 586.3 504 62.9
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.2e-165 586.3 505 63.0
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.9e-165 585.1 504 63.1
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.9e-165 585.1 507 62.3
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.9e-165 585.1 514 62.8
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.4e-164 583.6 504 63.1
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.4e-164 583.6 501 63.7
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.9e-164 583.2 505 62.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.9e-164 583.2 505 62.8
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-164 583.2 514 62.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.9e-164 583.2 514 62.6
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.4e-164 582.8 504 63.1
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 5.4e-164 581.6 501 62.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 7.1e-164 581.3 503 62.6
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 9.2e-164 580.9 503 62.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-163 580.5 503 62.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-163 580.1 503 62.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 3.5e-163 578.9 507 62.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 7.8e-163 577.8 515 61.2
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-162 577.0 501 62.9
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-162 576.2 502 62.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.9e-162 575.5 501 62.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 5.1e-162 575.1 495 63.4
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.6e-162 574.7 503 62.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.5e-161 573.5 499 62.5
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-161 573.2 505 62.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.9e-161 573.2 502 62.2
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.5e-161 572.8 500 62.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.5e-161 572.8 498 62.7
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-160 570.5 507 62.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-160 570.1 495 62.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-160 570.1 499 61.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.8e-160 569.3 514 60.5
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.8e-160 569.3 546 59.0
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.2e-160 568.2 503 62.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-159 567.0 499 62.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.4e-159 567.0 538 59.7
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.1e-159 565.8 500 62.8
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 9.0e-159 564.3 467 65.1
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 4.4e-158 562.0 495 61.6
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.3e-157 560.5 498 62.2
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 4.9e-157 558.5 501 61.3
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.4e-156 556.2 514 60.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.2e-156 555.8 401 71.6
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 4.2e-156 555.4 501 60.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.3e-156 554.3 505 60.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.6e-152 542.3 504 60.5
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 4.8e-152 542.0 508 58.5
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 7.6e-150 534.6 522 58.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.4e-149 531.2 501 58.3
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 4.2e-148 528.9 507 57.8
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 5.4e-148 528.5 504 57.3
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 6.0e-147 525.0 575 53.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.0e-147 525.0 595 51.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.8e-146 523.5 503 57.9
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.3e-146 523.1 496 57.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.3e-144 517.3 532 56.4
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 8.1e-144 514.6 504 56.0
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.4e-143 513.8 475 59.4
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 4.5e-142 508.8 500 56.8
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 6.4e-141 505.0 505 56.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.0e-138 497.7 518 52.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 6.7e-138 495.0 507 54.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 6.7e-138 495.0 500 57.2
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 9.0e-135 484.6 498 54.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.0e-134 483.4 379 67.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.5e-134 482.3 502 52.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 6.1e-131 471.9 501 53.7
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.9e-131 471.5 382 66.5
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.3e-130 469.9 394 63.2
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 5.9e-126 455.3 537 48.2
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.3e-125 454.1 359 66.3
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 6.5e-125 451.8 555 47.7
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.7e-123 446.4 460 52.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 3.9e-122 442.6 376 67.3
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-121 441.0 395 59.7
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 6.3e-120 435.3 499 49.1
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.5e-109 398.7 265 74.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-104 384.4 389 56.0
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.6e-102 376.7 370 58.9
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-99 367.1 353 59.8
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.4e-97 359.4 434 46.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.7e-96 357.5 376 56.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 9.4e-92 341.7 275 65.5
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.2e-80 303.9 318 56.6
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.7e-78 297.0 252 63.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.5e-76 290.4 316 55.1
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 5.6e-76 289.3 204 73.0
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-74 285.0 183 74.9
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 9.2e-71 271.9 233 62.2
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.9e-69 266.5 279 55.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 7.3e-60 235.7 144 84.7
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.8e-58 231.1 485 33.6
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.6e-54 218.0 134 78.4
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.3e-52 210.3 134 74.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 6.8e-50 202.6 220 50.9
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.9e-48 197.2 153 66.7
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.3e-44 183.3 114 77.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.4e-40 169.1 168 60.1
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.4e-39 167.5 114 73.7
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 5.8e-33 146.4 176 50.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 9.9e-33 145.6 255 42.4
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 3.8e-32 143.7 193 45.1
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.8e-29 134.8 136 58.1
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 6.5e-24 116.3 75 74.7
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 5.5e-23 113.2 161 44.7
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 7.9e-22 109.4 64 79.7
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 5.1e-21 106.7 72 70.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.9e-20 104.8 74 71.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 9.6e-20 102.4 72 72.2
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.3e-19 102.1 126 46.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 4.8e-19 100.1 207 33.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 7.6e-17 92.8 65 75.4
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.3e-12 77.0 85 54.1
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.3e-12 77.0 85 54.1
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.2e-11 72.8 46 69.6
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.6e-09 67.8 47 72.3
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 5.0e-08 63.5 38 71.1
PRCOL_00005866 Prasinoderma coloniale HOM05D059678 ORTHO05D044246 1.2e-06 58.9 150 28.0
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 6.1e-06 56.6 48 70.8


User provided reference genes

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