Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004568g0020 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.6e-75 286.6 173 100.0
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 9.9e-57 224.2 123 87.0
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 2.9e-56 222.6 123 88.6
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 3.8e-56 222.2 123 87.0
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.8e-56 222.2 121 87.6
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.8e-56 222.2 117 88.9
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 3.8e-56 222.2 123 87.8
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 6.4e-56 221.5 114 92.1
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.1e-55 220.7 114 92.1
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 7.1e-55 218.0 123 85.4
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 6.0e-54 214.9 123 84.6
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 7.8e-54 214.5 114 90.4
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 1.0e-53 214.2 121 86.8
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 1.0e-53 214.2 123 84.6
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.0e-53 214.2 114 88.6
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 1.1e-52 210.7 123 83.7
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 1.9e-52 209.9 114 88.6
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 3.3e-52 209.1 123 80.5
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-50 204.1 123 80.5
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-50 204.1 123 80.5
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-50 204.1 123 80.5
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 4.0e-50 202.2 105 91.4
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 5.3e-50 201.8 117 85.5
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 5.3e-50 201.8 123 80.5
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 1.2e-49 200.7 121 79.3
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 1.5e-49 200.3 123 78.9
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 3.8e-48 195.7 123 76.4
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 7.1e-47 191.4 115 80.0
Peaxi162Scf00323g00616 Petunia axillaris HOM05D003294 ORTHO05D004060 7.1e-47 191.4 118 77.1
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 9.3e-47 191.0 123 74.8
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 1.6e-46 190.3 123 74.0
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 1.6e-46 190.3 123 74.8
Atru.chr3.1652 Acer truncatum HOM05D003294 ORTHO05D004060 2.1e-46 189.9 119 76.5
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 1.1e-44 184.1 114 76.3
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 2.5e-44 183.0 114 75.4
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 3.3e-44 182.6 123 71.5
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 1.3e-43 180.6 122 75.4
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 2.8e-43 179.5 122 71.3
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 1.4e-42 177.2 121 70.2
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 5.3e-42 175.3 114 71.9
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 5.3e-42 175.3 123 69.9
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 6.9e-42 174.9 123 69.9
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 9.0e-42 174.5 123 69.9
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 1.2e-41 174.1 114 71.9
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 2.0e-41 173.3 124 72.6
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 3.4e-41 172.6 123 69.1
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 3.4e-41 172.6 123 69.1
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 3.4e-41 172.6 123 69.9
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 2.2e-40 169.9 120 68.3
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 2.9e-40 169.5 120 69.2
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 3.8e-40 169.1 125 69.6
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 6.4e-40 168.3 120 68.3
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 1.9e-39 166.8 126 69.0
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 1.9e-39 166.8 126 69.0
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 7.1e-39 164.9 120 67.5
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 9.3e-39 164.5 106 75.5
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 9.3e-39 164.5 127 67.7
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 1.2e-38 164.1 119 66.4
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.2e-38 164.1 117 66.7
HanXRQChr14g0437071 Helianthus annuus HOM05D003294 ORTHO05D004060 1.6e-38 163.7 135 65.2
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.6e-38 163.7 113 69.9
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 1.6e-38 163.7 116 69.0
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 3.5e-38 162.5 118 67.8
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 3.5e-38 162.5 114 67.5
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 3.5e-38 162.5 114 67.5
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 4.6e-38 162.2 122 66.4
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 4.6e-38 162.2 119 65.5
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 4.6e-38 162.2 119 65.5
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 2.3e-37 159.8 137 62.8
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 3.0e-37 159.5 120 68.3
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 3.0e-37 159.5 106 71.7
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 5.1e-37 158.7 125 65.6
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 5.1e-37 158.7 114 63.2
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 6.7e-37 158.3 114 65.8
BraA03t11617Z Brassica rapa HOM05D003294 ORTHO05D004060 6.7e-37 158.3 114 65.8
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 8.7e-37 157.9 98 76.5
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 8.7e-37 157.9 114 64.0
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 1.1e-36 157.5 114 65.8
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 1.9e-36 156.8 114 65.8
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 1.9e-36 156.8 114 65.8
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 1.9e-36 156.8 114 65.8
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 3.3e-36 156.0 108 67.6
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 1.3e-35 154.1 114 64.0
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 1.6e-35 153.7 121 64.5
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 3.7e-35 152.5 114 64.0
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 4.8e-35 152.1 113 63.7
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 6.2e-35 151.8 114 64.0
CARHR169650 Cardamine hirsuta HOM05D003294 ORTHO05D004060 6.2e-35 151.8 110 65.5
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 8.1e-35 151.4 114 63.2
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 8.1e-35 151.4 114 63.2
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 8.1e-35 151.4 122 63.9
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 1.1e-34 151.0 123 62.6
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.1e-34 151.0 123 62.6
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.1e-34 151.0 123 62.6
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 1.1e-34 151.0 114 63.2
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 1.1e-34 151.0 114 63.2
SGA_v2.0_scaffold406G51043 Striga asiatica HOM05D003294 ORTHO05D004060 1.1e-34 151.0 119 67.2
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 1.4e-34 150.6 117 63.2
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 1.4e-34 150.6 121 61.2
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 1.8e-34 150.2 114 63.2
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 1.8e-34 150.2 127 64.6
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 2.4e-34 149.8 114 62.3
Hund06534 Selenicereus undatus HOM05D003294 ORTHO05D004060 4.0e-34 149.1 121 59.5
BraA04t18713Z Brassica rapa HOM05D003294 ORTHO05D004060 5.3e-34 148.7 121 61.2
BraA05t19350Z Brassica rapa HOM05D003294 ORTHO05D004060 9.0e-34 147.9 121 61.2
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 9.0e-34 147.9 112 63.4
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 2.0e-33 146.7 126 61.1
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 3.4e-33 146.0 113 62.8
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 3.4e-33 146.0 121 61.2
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 4.5e-33 145.6 115 60.9
Haze_00702 Corylus avellana HOM05D003294 ORTHO05D004060 7.6e-33 144.8 97 73.2
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.3e-32 144.1 104 67.3
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 1.3e-32 144.1 104 67.3
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.8e-32 142.5 114 63.2
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 6.5e-32 141.7 123 59.3
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 6.5e-32 141.7 129 58.9
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 6.5e-32 141.7 114 59.6
Nn7g38030 Nelumbo nucifera HOM05D003294 ORTHO05D004060 6.5e-32 141.7 121 57.0
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 8.4e-32 141.4 121 59.5
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.1e-31 141.0 121 57.0
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.1e-31 141.0 119 58.8
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 1.4e-31 140.6 124 61.3
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 1.4e-31 140.6 78 82.1
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 1.9e-31 140.2 123 59.3
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 3.2e-31 139.4 123 59.3
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 4.2e-31 139.0 129 58.1
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 5.5e-31 138.7 115 61.7
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 5.5e-31 138.7 118 59.3
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.6e-30 137.1 129 57.4
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 1.6e-30 137.1 117 59.8
BcaB01g03408 Brassica carinata HOM05D003294 ORTHO05D004060 2.1e-30 136.7 96 67.7
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 2.1e-30 136.7 129 58.9
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 3.5e-30 136.0 104 65.4
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 4.6e-30 135.6 129 58.9
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.0e-29 134.4 106 59.4
ATR0743G132 Amborella trichopoda HOM05D003294 ORTHO05D004060 1.3e-29 134.0 106 63.2
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 8.7e-29 131.3 129 58.1
Sc10g0006170 Simmondsia chinensis HOM05D003294 ORTHO05D004060 8.7e-29 131.3 94 64.9
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 8.7e-29 131.3 125 58.4
Phvul.007G084600 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 1.5e-28 130.6 116 62.1
RcHm_v2.0_Chr4g0408821 Rosa chinensis HOM05D003294 ORTHO05D004060 1.9e-28 130.2 101 64.4
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 2.5e-28 129.8 123 56.1
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 2.5e-28 129.8 125 56.0
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 2.5e-28 129.8 123 57.7
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 2.5e-28 129.8 123 55.3
Medtr1g033100 Medicago truncatula HOM05D003294 ORTHO05D004060 3.3e-28 129.4 120 57.5
TPR.G6490 Trifolium pratense HOM05D003294 ORTHO05D004060 4.3e-28 129.0 121 57.0
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 7.4e-28 128.3 123 56.1
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 9.6e-28 127.9 123 56.9
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 1.3e-27 127.5 123 56.9
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 1.3e-27 127.5 123 55.3
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 1.3e-27 127.5 123 56.1
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 6.3e-27 125.2 123 55.3
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 1.1e-26 124.4 112 58.9
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 3.1e-26 122.9 121 54.5
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 1.5e-25 120.6 103 57.3
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 7.6e-25 118.2 80 72.5
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 1.7e-24 117.1 112 55.4
Ca_13008_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 4.2e-23 112.5 101 58.4
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 7.2e-23 111.7 78 65.4
arahy.Tifrunner.gnm1.ann1.3MFN7L Arachis hypogaea HOM05D003294 ORTHO05D004060 9.3e-23 111.3 104 57.7
arahy.Tifrunner.gnm1.ann1.MNWX4W Arachis hypogaea HOM05D003294 ORTHO05D004060 6.1e-22 108.6 107 56.1
arahy.Tifrunner.gnm1.ann1.067A10 Arachis hypogaea HOM05D003294 ORTHO05D004060 1.0e-21 107.8 104 56.7
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 1.0e-21 107.8 130 51.5
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 1.0e-21 107.8 130 51.5
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 1.3e-21 107.5 123 50.4
Ca_13010_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 1.8e-21 107.1 101 56.4
Ca_13009_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 2.3e-21 106.7 102 56.9
arahy.Tifrunner.gnm1.ann1.U55V76 Arachis hypogaea HOM05D003294 ORTHO05D004060 3.0e-21 106.3 107 55.1
PSO478G2289 Papaver somniferum HOM05D003294 ORTHO05D004060 3.3e-20 102.8 128 44.5
arahy.Tifrunner.gnm1.ann1.AM9QWL Arachis hypogaea HOM05D003294 ORTHO05D004060 7.4e-20 101.7 99 55.6
SEGI_35656 Sequoiadendron giganteum HOM05D003294 ORTHO05D004060 9.7e-20 101.3 116 45.7
Lalb_Chr21g0307691 Lupinus albus HOM05D003294 ORTHO05D004060 2.8e-19 99.8 121 47.9
vmacro00571 Vaccinium macrocarpon HOM05D003294 ORTHO05D004060 2.6e-17 93.2 92 46.7
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 1.3e-16 90.9 125 46.4
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 1.4e-13 80.9 123 42.3
Os01g0899700 Oryza sativa ssp. japonica HOM05D003294 ORTHO05D004060 4.4e-12 75.9 110 39.1
Lj2g0020959 Lotus japonicus HOM05D003294 ORTHO05D004060 2.2e-11 73.6 75 54.7
Solyc12g038700.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 3.1e-10 69.7 123 38.2
Aqoxy1G02134 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 6.9e-10 68.6 49 61.2
Zm00001eb144520 Zea mays HOM05D003294 ORTHO05D004060 2.0e-09 67.0 139 33.8
MBI11_g33754_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 7.7e-09 65.1 61 50.8
Aqoxy7G03524 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 1.4e-07 60.8 107 38.3
SMO223G0034 Selaginella moellendorffii HOM05D003294 ORTHO05D004060 2.7e-06 56.6 120 36.7


User provided reference genes

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