Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-52 207.6 103 100.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.4e-37 159.5 118 72.0
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 7.3e-34 147.1 151 57.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-31 139.4 173 50.9
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-31 139.4 173 50.9
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 2.0e-31 139.0 108 67.6
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-30 136.0 179 49.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.1e-29 133.3 174 48.3
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.2e-28 129.8 169 47.3
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 4.6e-28 127.9 152 50.7
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 7.8e-28 127.1 146 52.7
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 3.6e-25 118.2 69 88.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.1e-25 117.1 134 54.5
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.4e-24 115.5 135 51.9
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.1e-24 115.2 135 51.1
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.0e-23 112.5 135 50.4
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 2.6e-23 112.1 70 84.3
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 3.8e-22 108.2 62 87.1
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 4.9e-22 107.8 69 81.2
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 8.7e-19 97.1 69 76.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-18 95.9 56 87.5
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 1.8e-16 89.4 103 48.5
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 2.4e-16 89.0 56 82.1
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 9.0e-16 87.0 56 78.6
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 1.6e-12 76.3 69 63.8
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 6.0e-12 74.3 54 63.0
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.0e-12 74.3 54 63.0
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 7.8e-12 73.9 54 61.1
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-11 73.6 56 60.7
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 1.3e-11 73.2 86 43.0
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 1.3e-11 73.2 53 60.4
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-11 71.6 54 61.1
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.1e-10 70.1 54 61.1
SHI33643 Sapria himalayana HOM05D005794 ORTHO05D010624 1.9e-10 69.3 35 82.9
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 2.5e-10 68.9 48 68.8
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 6.2e-09 64.3 54 55.6
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 6.2e-09 64.3 54 55.6
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-08 63.5 50 70.0
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.1e-08 63.5 54 55.6
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 1.4e-08 63.2 54 53.7
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 1.8e-08 62.8 54 55.6
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.8e-08 62.8 74 47.3
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.8e-08 62.8 74 47.3
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.8e-08 62.8 74 47.3
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 2.4e-08 62.4 54 55.6
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 3.1e-08 62.0 54 51.9
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 3.1e-08 62.0 54 51.9
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 3.1e-08 62.0 74 45.9
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 3.1e-08 62.0 54 51.9
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 3.1e-08 62.0 54 51.9
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 3.1e-08 62.0 54 51.9
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 3.1e-08 62.0 74 45.9
CARHR141830 Cardamine hirsuta HOM05D011069 ORTHO05D010624 4.0e-08 61.6 54 55.6
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 5.3e-08 61.2 54 51.9
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 5.3e-08 61.2 54 51.9
Sp4g28540 Schrenkiella parvula HOM05D011069 ORTHO05D010624 9.0e-08 60.5 54 53.7
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.5e-07 59.7 55 58.2
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.5e-07 59.7 55 58.2
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.5e-07 59.7 74 44.6
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.0e-07 59.3 68 50.0
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 2.6e-07 58.9 74 44.6
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.6e-07 58.9 74 44.6
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.6e-07 58.9 74 44.6
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 3.4e-07 58.5 50 58.0
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.4e-07 58.5 74 43.2
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 3.4e-07 58.5 68 48.5
FvH4_2g07040 Fragaria vesca HOM05D022571 ORTHO05D029580 4.5e-07 58.2 60 48.3
FAN15G1463 Fragaria x ananassa HOM05D022571 ORTHO05D029580 4.5e-07 58.2 60 48.3
FAN27G0090 Fragaria x ananassa HOM05D022571 ORTHO05D029580 4.5e-07 58.2 60 48.3
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 4.5e-07 58.2 49 65.3
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 4.5e-07 58.2 68 47.1
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-07 58.2 55 60.0
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 4.5e-07 58.2 74 44.6
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 5.8e-07 57.8 68 48.5
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 5.8e-07 57.8 68 47.1
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 5.8e-07 57.8 68 48.5
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 5.8e-07 57.8 48 56.2
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 7.6e-07 57.4 55 56.4
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 7.6e-07 57.4 55 56.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 7.6e-07 57.4 55 56.4
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 7.6e-07 57.4 54 50.0
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.3e-06 56.6 55 56.4
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.3e-06 56.6 74 43.2
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.7e-06 56.2 74 41.9
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.7e-06 56.2 74 41.9
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 1.7e-06 56.2 54 48.1
FAN24G3155 Fragaria x ananassa HOM05D022571 ORTHO05D029580 2.2e-06 55.8 60 46.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 2.9e-06 55.5 138 34.1
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 2.9e-06 55.5 54 50.0
AL4G45920 Arabidopsis lyrata HOM05D011069 ORTHO05D010624 3.8e-06 55.1 57 45.6
AT2G46505 Arabidopsis thaliana HOM05D011069 ORTHO05D010624 4.9e-06 54.7 57 45.6
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 4.9e-06 54.7 54 46.3
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 4.9e-06 54.7 74 40.5
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 4.9e-06 54.7 74 40.5


User provided reference genes

Program Settings