Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 9.1e-52 206.5 93 100.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.0e-51 205.3 93 98.9
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.7e-42 175.6 93 84.9
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.5e-41 172.6 98 83.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.5e-41 172.6 98 83.7
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.2e-40 169.5 98 81.6
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 2.8e-40 168.3 91 80.2
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 8.0e-40 166.8 82 87.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.0e-39 166.4 78 89.7
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.0e-39 166.4 93 81.7
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.8e-39 165.6 87 81.6
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.1e-39 164.9 91 78.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.1e-39 164.9 91 81.3
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.5e-38 162.5 86 81.4
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.5e-38 162.5 78 88.5
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.0e-38 162.2 89 77.5
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.0e-38 162.2 81 87.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.0e-38 162.2 91 79.1
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.6e-38 161.8 77 87.0
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 5.8e-38 160.6 93 77.4
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 5.8e-38 160.6 87 78.2
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.7e-37 159.1 79 83.5
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.7e-37 159.1 79 83.5
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.7e-37 159.1 89 78.7
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.2e-37 158.7 85 80.0
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.9e-37 158.3 91 75.8
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 2.9e-37 158.3 78 85.9
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 3.7e-37 157.9 79 86.1
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.9e-37 157.5 78 84.6
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.9e-37 157.5 78 84.6
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 4.9e-37 157.5 78 83.3
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.9e-37 157.5 87 78.2
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.9e-37 157.5 96 74.0
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 6.4e-37 157.1 89 76.4
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.1e-36 156.4 91 76.9
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.4e-36 156.0 81 84.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.4e-36 156.0 79 83.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.4e-36 156.0 87 78.2
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.9e-36 155.6 79 83.5
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.4e-36 155.2 90 73.3
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 2.4e-36 155.2 87 78.2
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 3.2e-36 154.8 84 78.6
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 4.1e-36 154.5 87 78.2
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.4e-36 154.1 93 74.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.0e-36 153.7 95 72.6
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.2e-35 152.9 85 76.5
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.6e-35 152.5 89 74.2
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.6e-35 152.5 88 75.0
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 79 81.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.7e-35 151.8 76 82.9
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.7e-35 151.8 77 83.1
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 3.5e-35 151.4 87 74.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 4.6e-35 151.0 89 76.4
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 6.0e-35 150.6 93 72.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 7.8e-35 150.2 80 80.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.0e-34 149.8 77 80.5
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.0e-34 149.8 79 81.0
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.3e-34 149.4 77 80.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.3e-34 149.4 80 78.8
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 2.3e-34 148.7 77 81.8
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 2.3e-34 148.7 77 80.5
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.3e-34 148.7 80 77.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 3.9e-34 147.9 80 77.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.0e-34 147.5 79 78.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 5.0e-34 147.5 78 78.2
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.6e-34 147.1 80 77.5
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.6e-34 147.1 78 79.5
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.6e-34 146.7 80 76.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 8.6e-34 146.7 77 81.8
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.5e-33 145.2 80 75.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.3e-33 144.8 87 73.6
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.3e-33 144.4 78 76.9
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 7.3e-33 143.7 87 73.6
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 7.3e-33 143.7 77 79.2
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.6e-32 142.5 91 70.3
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 3.1e-31 138.3 80 70.0
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 6.8e-31 137.1 91 67.0
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.6e-30 135.2 125 54.4
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 3.9e-26 121.3 144 45.1
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 2.2e-21 105.5 68 67.6
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.9e-20 102.4 198 32.3
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.2e-19 99.8 77 58.4
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 8.6e-18 93.6 43 90.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.1e-17 93.2 42 92.9
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.8e-16 88.6 41 90.2
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 8.1e-16 87.0 41 90.2
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 6.8e-15 84.0 42 81.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.7e-13 79.3 50 66.0
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 6.4e-13 77.4 50 68.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 6.4e-13 77.4 45 68.9
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.2e-12 74.7 42 71.4
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.6e-11 72.8 43 69.8
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.6e-11 72.8 45 73.3
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 7.8e-11 70.5 86 39.5
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.3e-10 69.7 32 93.8
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.0e-10 68.6 79 40.5
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 3.9e-10 68.2 79 40.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 3.9e-10 68.2 79 41.8
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 5.1e-10 67.8 79 39.2
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 6.6e-10 67.4 79 40.5
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 8.7e-10 67.0 79 39.2
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 8.7e-10 67.0 90 36.7
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.5e-09 66.2 90 36.7
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.5e-09 66.2 79 39.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.5e-09 66.2 94 37.2
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.5e-09 66.2 79 39.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.5e-09 66.2 89 38.2
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.5e-09 66.2 93 37.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.9e-09 65.9 79 39.2
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.5e-09 65.5 90 36.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 2.5e-09 65.5 79 39.2
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.5e-09 65.5 89 34.8
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.5e-09 65.5 79 39.2
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 3.3e-09 65.1 85 38.8
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 3.3e-09 65.1 85 38.8
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 3.3e-09 65.1 84 35.7
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 3.3e-09 65.1 88 36.4
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 4.3e-09 64.7 86 36.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 4.3e-09 64.7 90 36.7
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 4.3e-09 64.7 85 34.1
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 4.3e-09 64.7 79 38.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.6e-09 64.3 87 36.8
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 5.6e-09 64.3 84 38.1
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 5.6e-09 64.3 79 38.0
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 7.3e-09 63.9 79 38.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 7.3e-09 63.9 79 38.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 7.3e-09 63.9 79 38.0
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 36.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 38.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 38.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 9.6e-09 63.5 77 39.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 36.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 9.6e-09 63.5 93 38.7
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 38.0
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 36.7
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 36.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 36.7
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 36.7
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 38.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 38.0
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 35.4
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 2.1e-08 62.4 79 38.0
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 2.8e-08 62.0 88 35.2
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.6e-08 61.6 84 34.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 3.6e-08 61.6 79 36.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.6e-08 61.6 88 36.4
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 3.6e-08 61.6 79 35.4
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 4.8e-08 61.2 91 35.2
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 4.8e-08 61.2 79 36.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 6.2e-08 60.8 79 35.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 8.1e-08 60.5 79 38.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 8.1e-08 60.5 88 36.4
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.1e-07 60.1 77 35.1
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 34.2
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.1e-07 60.1 83 34.9
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.1e-07 60.1 91 34.1
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.4e-07 59.7 86 34.9
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.4e-07 59.7 86 34.9
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.4e-07 59.7 86 34.9
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.4e-07 59.7 86 34.9
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 35.4
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 35.4
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.8e-07 59.3 86 33.7
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.8e-07 59.3 88 34.1
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.4e-07 58.9 95 32.6
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 3.1e-07 58.5 101 31.7
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 4.0e-07 58.2 94 33.0
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 5.3e-07 57.8 77 35.1
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-06 56.6 108 30.6
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 32.9
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 2.6e-06 55.5 83 33.7
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 4.4e-06 54.7 118 28.0
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 4.4e-06 54.7 70 38.6
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 9.9e-06 53.5 83 32.5
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 9.9e-06 53.5 86 33.7


User provided reference genes

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