Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.6e-126 453.8 216 100.0
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.7e-78 294.3 291 57.0
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 5.9e-70 268.1 293 52.6
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 3.3e-68 262.3 293 51.9
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.0e-65 253.1 295 50.8
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 2.6e-65 252.7 288 51.7
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 2.2e-64 249.6 290 50.7
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 3.9e-61 238.8 320 45.3
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 5.8e-49 198.4 292 41.4
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.7e-48 196.8 308 40.3
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.2e-48 196.4 291 39.2
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.9e-48 195.3 288 38.9
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 4.9e-48 195.3 291 40.5
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.9e-47 193.4 292 39.4
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 3.2e-47 192.6 284 41.5
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.6e-46 190.3 298 39.9
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 3.5e-46 189.1 287 40.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 6.0e-46 188.3 282 41.1
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 6.0e-46 188.3 282 40.4
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 6.0e-46 188.3 287 40.4
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 7.8e-46 188.0 282 40.1
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 7.8e-46 188.0 290 38.6
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.3e-45 187.2 251 41.8
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.7e-45 186.8 283 38.9
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.7e-45 186.8 285 38.9
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.3e-45 186.4 287 38.0
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 3.0e-45 186.0 284 40.8
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.9e-45 185.7 303 38.9
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 3.9e-45 185.7 277 40.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.1e-44 184.1 276 39.9
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-44 184.1 296 39.5
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-44 184.1 296 39.5
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.5e-44 183.7 292 38.7
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.5e-44 183.7 281 38.1
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 3.3e-44 182.6 283 39.2
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.3e-44 182.6 290 38.6
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.3e-44 182.6 282 38.3
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 3.3e-44 182.6 287 36.6
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 5.6e-44 181.8 296 39.2
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 7.3e-44 181.4 281 37.7
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.6e-44 181.0 296 38.9
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.2e-43 180.6 297 39.4
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.6e-43 180.3 282 39.4
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 2.1e-43 179.9 294 36.7
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.1e-43 179.9 282 39.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.1e-43 179.9 296 38.9
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-43 179.5 282 39.4
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 4.7e-43 178.7 277 39.0
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 4.7e-43 178.7 279 37.3
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 8.1e-43 177.9 302 37.1
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.4e-42 177.2 284 36.6
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.4e-42 177.2 282 37.6
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.8e-42 176.8 276 39.5
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 3.1e-42 176.0 284 39.1
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 4.0e-42 175.6 286 37.4
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 4.0e-42 175.6 275 36.7
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 4.0e-42 175.6 276 39.1
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 4.0e-42 175.6 290 37.2
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.2e-41 174.1 287 36.2
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.5e-41 173.7 279 37.6
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 2.0e-41 173.3 278 37.4
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.6e-41 172.9 266 38.3
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 2.6e-41 172.9 281 36.7
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 3.4e-41 172.6 284 37.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 3.4e-41 172.6 282 37.2
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 5.8e-41 171.8 273 37.0
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 5.8e-41 171.8 293 36.5
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 5.8e-41 171.8 286 36.0
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 7.6e-41 171.4 279 36.9
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 9.9e-41 171.0 280 37.1
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 1.3e-40 170.6 289 37.7
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 2.2e-40 169.9 281 36.3
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 2.9e-40 169.5 283 36.0
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.9e-40 169.5 280 36.4
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 2.9e-40 169.5 300 35.7
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 4.9e-40 168.7 279 36.6
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 4.9e-40 168.7 196 47.4
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 6.4e-40 168.3 279 35.8
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 6.4e-40 168.3 279 36.2
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 6.4e-40 168.3 279 36.2
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 8.4e-40 167.9 284 38.4
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.1e-39 167.5 279 35.8
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 1.4e-39 167.2 332 33.7
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.4e-39 167.2 312 34.9
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.9e-39 166.8 279 36.2
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 2.4e-39 166.4 259 41.3
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 2.4e-39 166.4 296 38.5
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 4.2e-39 165.6 296 38.5
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 4.2e-39 165.6 279 37.3
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 4.2e-39 165.6 281 35.2
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 5.4e-39 165.2 286 34.6
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 5.4e-39 165.2 283 35.7
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 5.4e-39 165.2 283 35.7
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 7.1e-39 164.9 288 34.7
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.3e-39 164.5 283 37.8
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 9.3e-39 164.5 278 38.8
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.2e-38 164.1 287 38.3
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.6e-38 163.7 306 33.7
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.1e-38 163.3 279 37.6
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 2.7e-38 162.9 287 38.0
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.7e-38 162.9 252 38.5
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 3.5e-38 162.5 276 35.1
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 3.5e-38 162.5 281 35.2
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 4.6e-38 162.2 279 34.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.6e-38 162.2 289 35.3
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.6e-38 162.2 289 35.3
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.0e-37 161.0 280 36.8
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 2.3e-37 159.8 279 36.9
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 3.9e-37 159.1 292 37.0
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 6.6e-37 158.3 259 38.2
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.5e-36 157.1 283 36.0
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.9e-36 156.8 291 34.7
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 6.2e-35 151.8 252 37.3
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 3.4e-33 146.0 253 36.0
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 3.8e-32 142.5 163 47.2
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 4.2e-31 139.0 178 43.8
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 7.1e-31 138.3 249 34.5
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.3e-29 134.0 150 47.3
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 5.1e-29 132.1 148 45.3
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 8.7e-29 131.3 148 45.3
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.1e-28 131.0 148 45.3
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.9e-28 130.2 177 41.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 9.6e-28 127.9 280 31.1
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 6.9e-26 121.7 152 42.1
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 2.0e-25 120.2 173 39.9
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.4e-24 115.2 215 38.1
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.9e-23 113.6 257 29.2
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 7.1e-23 111.7 261 29.9
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 9.3e-23 111.3 54 96.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.6e-22 110.5 228 33.8
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.5e-22 109.4 180 34.4
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.3e-20 102.8 130 43.8
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 1.6e-19 100.5 49 87.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.6e-17 93.2 168 33.3
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.6e-14 84.0 50 70.0
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 6.0e-14 82.0 181 29.8
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.9e-13 79.3 46 76.1
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 5.1e-13 79.0 247 25.5
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.3e-11 74.3 45 71.1
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.6e-11 73.9 263 24.3
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 2.8e-11 73.2 127 29.9
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 3.1e-10 69.7 67 47.8
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 6.9e-10 68.6 67 50.7
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 3.4e-09 66.2 43 67.4
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 6.5e-08 62.0 81 45.7


User provided reference genes

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