Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.9e-235 817.4 400 100.0
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-226 789.3 400 96.2
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 5.8e-212 740.7 397 90.9
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 3.0e-208 728.4 397 89.9
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 3.3e-207 724.9 401 89.5
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 9.0e-197 690.3 351 94.0
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 4.2e-194 681.4 429 80.9
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 3.3e-183 645.2 403 78.2
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.7e-182 641.7 404 77.2
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.6e-177 626.3 402 76.4
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.3e-176 622.5 398 76.1
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 6.7e-176 620.9 399 75.9
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 8.7e-176 620.5 402 74.6
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.1e-175 620.2 400 76.5
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.5e-175 619.0 397 76.3
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 5.7e-175 617.8 401 75.3
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 3.7e-174 615.1 402 73.1
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.7e-174 615.1 401 75.8
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 4.8e-174 614.8 400 75.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 4.8e-174 614.8 401 75.8
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 4.8e-174 614.8 403 75.2
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.1e-173 613.6 402 75.1
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.4e-173 612.5 350 84.3
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 3.1e-173 612.1 408 73.8
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 3.1e-173 612.1 408 73.8
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.1e-173 611.7 403 75.9
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.9e-173 610.9 405 75.3
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 3.4e-172 608.6 402 74.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.3e-171 606.7 401 72.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.7e-171 606.3 402 72.1
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 2.9e-171 605.5 407 72.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.5e-170 602.4 441 68.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.5e-170 602.4 420 71.4
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 5.5e-170 601.3 421 70.3
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.4e-170 600.5 396 74.0
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 9.4e-170 600.5 428 71.0
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 2.1e-169 599.4 403 74.4
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 3.6e-169 598.6 397 75.3
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 2.3e-168 595.9 407 71.7
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 5.1e-168 594.7 349 78.5
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.1e-167 593.6 405 72.1
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.1e-167 593.6 413 72.2
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 1.1e-167 593.6 409 72.1
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.5e-167 592.4 366 78.4
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 4.3e-167 591.7 366 77.0
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 9.7e-167 590.5 401 73.8
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.3e-166 590.1 339 82.0
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 6.3e-166 587.8 400 70.8
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 8.2e-166 587.4 386 72.3
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 4.1e-165 585.1 403 71.0
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 4.1e-165 585.1 411 70.3
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.3e-165 584.7 399 72.9
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 5.3e-165 584.7 397 72.3
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-164 583.6 398 71.4
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-164 583.6 333 80.8
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.4e-164 582.0 403 72.0
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 4.5e-164 581.6 399 72.4
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 4.5e-164 581.6 405 71.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 5.9e-164 581.3 399 72.4
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 5.9e-164 581.3 397 71.3
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 7.7e-164 580.9 404 69.8
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-163 580.5 355 76.9
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.0e-163 580.5 391 72.9
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.7e-163 579.7 399 70.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.2e-163 579.3 404 70.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 2.2e-163 579.3 372 73.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 3.8e-163 578.6 397 71.5
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-163 578.2 395 71.4
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 8.5e-163 577.4 409 71.6
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.9e-162 576.2 403 71.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 3.2e-162 575.5 403 69.5
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 4.2e-162 575.1 400 72.0
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.2e-161 573.5 400 71.0
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.7e-161 572.4 370 73.0
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 6.1e-161 571.2 402 70.4
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 7.9e-161 570.9 399 70.9
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 7.9e-161 570.9 403 70.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.4e-160 570.1 396 72.0
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.3e-160 569.3 402 70.4
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 2.3e-160 569.3 400 70.5
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 5.1e-160 568.2 395 70.1
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 8.8e-160 567.4 370 75.4
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.3e-159 565.5 399 69.4
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 9.7e-159 563.9 404 70.0
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 2.8e-158 562.4 399 69.9
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.7e-158 562.0 361 74.8
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-158 561.6 370 73.2
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-158 561.6 404 69.3
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 4.8e-158 561.6 364 75.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.1e-157 560.5 420 66.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.1e-157 560.5 344 76.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.8e-157 559.7 361 74.0
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.4e-157 559.3 353 74.2
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.0e-156 556.2 374 72.5
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.3e-155 553.5 339 74.6
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 3.8e-155 552.0 403 68.0
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.9e-154 549.7 340 74.7
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 4.7e-153 545.0 397 68.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 8.0e-153 544.3 395 68.9
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 8.0e-153 544.3 378 67.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 8.0e-153 544.3 338 73.7
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 8.8e-152 540.8 298 85.2
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.3e-151 538.9 381 68.8
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.3e-151 538.9 383 68.9
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 3.3e-151 538.9 357 74.2
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.7e-151 538.1 403 68.5
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.7e-151 538.1 403 68.5
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 4.8e-150 535.0 403 68.2
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 5.3e-149 531.6 354 70.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 1.1e-146 523.9 403 66.7
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-146 522.7 395 66.3
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 7.2e-146 521.2 283 85.2
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 4.7e-145 518.5 339 72.0
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 8.0e-145 517.7 393 66.4
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.6e-143 512.7 298 79.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 3.4e-143 512.3 346 68.5
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.4e-141 506.1 332 72.9
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 2.4e-141 506.1 332 72.9
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-140 502.7 411 62.8
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 5.9e-140 501.5 401 64.1
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.2e-139 499.6 379 62.8
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 6.1e-137 491.5 328 69.8
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 7.5e-135 484.6 279 80.3
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.1e-130 470.7 330 65.8
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 8.0e-129 464.5 330 69.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.4e-128 463.8 436 59.2
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 4.0e-128 462.2 340 67.4
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 4.1e-117 425.6 359 58.8
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 6.0e-116 421.8 326 59.2
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.5e-111 407.1 263 74.5
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 3.0e-107 392.9 321 59.2
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 4.3e-106 389.0 295 61.7
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.1e-105 386.7 320 63.4
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.6e-97 360.5 332 57.8
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.6e-89 334.0 187 83.4
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.6e-87 326.6 249 67.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 6.0e-84 315.5 356 50.0
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 7.4e-82 308.5 253 64.4
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.4e-77 294.3 157 84.7
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 4.3e-74 282.7 275 55.6
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 6.2e-73 278.9 163 77.9
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-64 251.1 143 77.6
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 4.3e-58 229.6 313 43.5
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-57 228.0 235 53.6
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.9e-56 222.2 248 52.0
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-49 201.4 312 42.0
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.4e-45 185.3 176 58.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 2.7e-44 183.7 116 74.1
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-43 179.5 132 65.9
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-42 175.3 176 56.8
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-42 175.3 176 56.8
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-41 174.9 122 73.0
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-30 137.1 159 50.3
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-30 137.1 159 50.3
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.6e-28 131.3 232 37.9
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 4.2e-21 106.7 169 37.3
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 4.4e-18 96.7 49 81.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 4.4e-18 96.7 49 81.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-16 89.4 51 82.4
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-06 58.5 39 64.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 1.7e-06 58.2 44 59.1
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 3.9e-06 57.0 41 63.4
Ca_28728_v3 Cicer arietinum L. HOM05D004356 ORTHO05D148060 6.6e-06 56.2 212 26.9
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 8.6e-06 55.8 47 53.2


User provided reference genes

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