Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-139 500.0 247 100.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-96 356.3 195 92.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 4.1e-83 312.0 194 83.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.0e-78 295.4 202 76.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.8e-78 294.7 207 75.4
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.6e-77 292.7 202 74.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 7.5e-77 291.2 195 80.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 7.5e-77 291.2 195 80.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 7.5e-77 291.2 195 80.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-76 290.0 195 80.5
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.6e-74 283.5 210 73.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.0e-74 283.1 201 77.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.7e-74 282.7 198 73.2
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 5.9e-74 281.6 211 70.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.5e-72 276.9 166 83.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-72 276.6 181 77.9
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-72 276.6 166 82.5
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 9.5e-72 274.2 201 72.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.2e-71 273.9 199 73.9
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.6e-71 273.5 215 70.2
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.8e-71 272.7 208 72.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.8e-71 272.7 212 68.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.6e-71 272.3 201 71.6
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.7e-71 271.9 193 72.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 4.7e-71 271.9 217 69.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.3e-70 269.6 213 68.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.3e-70 269.6 204 69.6
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.1e-70 269.2 189 74.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.8e-70 268.1 200 72.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.2e-69 267.3 191 72.8
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.2e-69 267.3 197 69.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.2e-69 267.3 193 72.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.5e-69 266.9 197 70.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.6e-69 266.2 199 70.9
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.4e-69 265.8 231 62.8
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.3e-68 263.8 196 73.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-68 263.8 196 73.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-68 263.8 195 71.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 2.2e-68 263.1 196 72.4
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.9e-68 262.7 195 72.3
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.9e-68 262.7 197 72.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.9e-68 262.7 197 72.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.9e-68 262.7 197 72.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.9e-68 262.7 197 72.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.9e-68 262.7 196 72.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.9e-68 261.9 203 70.0
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.9e-68 261.9 154 85.7
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 8.3e-68 261.2 197 71.6
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 8.3e-68 261.2 208 68.3
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.1e-67 260.8 151 84.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.9e-67 260.0 155 84.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.4e-67 259.6 208 66.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.2e-67 259.2 154 84.4
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.2e-67 259.2 164 79.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.2e-67 259.2 214 65.9
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.1e-67 258.8 194 72.7
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 5.4e-67 258.5 193 71.5
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.4e-67 258.5 212 68.9
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 7.0e-67 258.1 208 69.7
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 9.2e-67 257.7 203 68.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.2e-66 257.3 197 68.5
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.2e-66 257.3 155 80.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.0e-66 256.5 216 65.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.0e-66 256.5 176 75.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.7e-66 256.1 202 69.8
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.7e-66 256.1 200 71.0
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.7e-66 256.1 201 67.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 4.6e-66 255.4 200 70.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.6e-66 255.4 225 62.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.8e-66 254.6 206 67.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.0e-65 254.2 216 63.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.0e-65 254.2 176 73.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.3e-65 253.8 196 70.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.3e-65 253.8 207 65.2
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.0e-65 252.7 170 75.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.0e-65 252.7 170 75.3
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.9e-65 252.3 208 66.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.0e-65 251.9 176 73.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.6e-65 251.1 194 71.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 8.6e-65 251.1 155 80.6
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.5e-64 250.4 226 61.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.9e-64 250.0 154 81.8
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.5e-64 249.6 154 81.8
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.5e-64 249.6 154 81.8
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.5e-64 249.6 154 81.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.6e-64 248.4 154 81.2
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.6e-64 248.4 154 81.2
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 5.6e-64 248.4 195 68.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 7.3e-64 248.1 214 65.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.6e-63 245.7 194 68.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.7e-63 245.4 176 73.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 6.2e-63 245.0 251 55.4
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 8.1e-63 244.6 153 77.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.3e-62 243.0 153 77.8
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.2e-62 241.9 204 65.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.6e-61 239.6 298 50.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.4e-61 239.2 199 65.3
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.8e-61 238.4 217 62.2
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.8e-61 238.4 153 77.8
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 7.5e-61 238.0 185 69.7
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 9.8e-61 237.7 199 64.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.3e-60 237.3 181 71.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.9e-60 236.1 197 64.5
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 3.7e-60 235.7 211 63.5
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.4e-60 235.0 189 66.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.4e-60 235.0 188 66.5
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.3e-60 234.6 200 63.5
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-59 233.4 190 66.3
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.7e-57 226.9 222 59.5
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.6e-55 220.3 197 63.5
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.1e-55 219.9 123 86.2
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-54 216.9 202 58.4
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.1e-54 216.1 200 60.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 3.4e-53 212.6 192 60.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.4e-52 208.0 188 61.7
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 7.1e-51 204.9 158 69.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.5e-50 202.6 154 65.6
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.3e-49 200.7 125 76.8
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.6e-49 198.4 188 58.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.6e-49 198.4 188 58.0
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 7.3e-48 194.9 194 56.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.2e-47 191.8 195 53.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.1e-47 191.4 102 93.1
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.8e-46 188.3 222 52.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.4e-45 186.0 120 75.8
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 9.9e-45 184.5 120 75.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 8.4e-44 181.4 165 60.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.8e-39 166.4 93 83.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.7e-36 157.1 209 51.7
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.8e-36 156.0 153 52.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 6.4e-36 155.2 112 63.4
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.9e-35 153.7 112 63.4
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 5.4e-35 152.1 81 91.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.6e-34 150.6 115 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.7e-33 147.1 124 56.5
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.9e-32 143.7 106 60.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.2e-29 134.4 138 51.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-26 124.0 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-26 124.0 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.5e-26 122.9 80 76.2
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.9e-22 108.6 118 57.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.8e-20 102.8 157 46.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 6.5e-20 102.1 70 71.4
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-15 87.8 160 38.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 6.9e-14 82.0 50 76.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.9e-08 63.9 117 39.3
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 6.3e-07 58.9 38 73.7


User provided reference genes

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