Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.5e-40 169.1 88 100.0
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.4e-40 167.9 88 98.9
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 2.1e-37 158.7 87 92.0
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 2.1e-37 158.7 87 92.0
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 2.1e-37 158.7 87 92.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 6.0e-37 157.1 86 94.2
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 3.4e-32 141.4 86 77.9
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 4.9e-31 137.5 87 75.9
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 8.4e-31 136.7 83 81.9
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.4e-30 136.0 85 76.5
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 5.5e-30 134.0 86 73.3
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 5.5e-30 134.0 82 85.4
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 7.1e-30 133.7 83 75.9
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 7.1e-30 133.7 87 73.6
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 7.1e-30 133.7 86 75.6
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 7.1e-30 133.7 87 73.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 7.1e-30 133.7 84 73.8
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 9.3e-30 133.3 86 76.7
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.6e-29 132.5 87 72.4
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.1e-29 132.1 86 70.9
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 2.7e-29 131.7 84 76.2
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.7e-29 131.7 83 78.3
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 3.5e-29 131.3 83 75.9
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 3.5e-29 131.3 83 74.7
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.6e-29 131.0 86 73.3
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 6.0e-29 130.6 87 73.6
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.0e-29 130.6 86 73.3
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 6.0e-29 130.6 83 77.1
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 6.0e-29 130.6 83 77.1
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 7.9e-29 130.2 82 75.6
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.0e-28 129.8 86 73.3
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.0e-28 129.8 86 72.1
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.0e-28 129.8 84 76.2
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.8e-28 129.0 85 71.8
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 5.1e-28 127.5 86 72.1
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 5.1e-28 127.5 86 72.1
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 6.7e-28 127.1 85 71.8
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 6.7e-28 127.1 83 75.9
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 8.7e-28 126.7 86 73.3
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 8.7e-28 126.7 86 72.1
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.1e-27 126.3 84 71.4
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.1e-27 126.3 86 72.1
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.1e-27 126.3 85 71.8
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.1e-27 126.3 85 69.4
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.5e-27 125.9 83 73.5
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.5e-27 125.9 85 69.4
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.5e-27 125.9 85 67.1
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.5e-27 125.9 84 71.4
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.5e-27 125.9 85 74.1
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.9e-27 125.6 82 73.2
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.9e-27 125.6 84 73.8
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.5e-27 125.2 84 70.2
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 2.5e-27 125.2 85 68.2
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 3.3e-27 124.8 84 70.2
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 4.3e-27 124.4 87 69.0
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 4.3e-27 124.4 85 72.9
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 4.3e-27 124.4 87 65.5
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 5.6e-27 124.0 83 72.3
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 7.4e-27 123.6 84 72.6
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 7.4e-27 123.6 87 69.0
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.3e-26 122.9 85 68.2
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.3e-26 122.9 85 68.2
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.1e-26 122.1 82 72.0
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 2.1e-26 122.1 85 70.6
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 3.7e-26 121.3 83 69.9
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.7e-26 121.3 83 69.9
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 6.2e-26 120.6 83 67.5
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.2e-26 120.6 85 67.1
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 6.2e-26 120.6 84 69.0
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 67.1
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.1e-25 119.8 82 70.7
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-25 119.8 82 70.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 67.1
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.4e-25 119.4 83 67.5
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 1.4e-25 119.4 85 69.4
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.4e-25 118.6 85 68.2
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.0e-25 117.9 85 64.7
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.3e-25 117.5 86 60.5
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.3e-25 117.5 83 67.5
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.3e-25 117.5 85 67.1
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 6.9e-25 117.1 84 66.7
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.5e-24 115.9 85 64.7
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 2.0e-24 115.5 81 65.4
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.6e-24 115.2 85 64.7
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 3.4e-24 114.8 85 64.7
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 3.4e-24 114.8 85 64.7
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 5.8e-24 114.0 78 74.4
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 5.8e-24 114.0 86 67.4
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 2.9e-23 111.7 85 62.4
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 8.4e-23 110.2 78 70.5
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 1.4e-22 109.4 72 70.8
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 3.2e-22 108.2 83 62.7
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 5.5e-22 107.5 82 63.4
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 5.5e-22 107.5 82 64.6
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 7.1e-22 107.1 69 75.4
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 7.1e-22 107.1 85 58.8
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.1e-21 105.5 82 61.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.7e-21 105.1 81 60.5
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.7e-21 105.1 81 60.5
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 4.6e-21 104.4 81 60.5
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 4.6e-21 104.4 82 61.0
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 4.6e-21 104.4 81 63.0
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 4.6e-21 104.4 82 62.2
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 6.1e-21 104.0 81 60.5
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 7.9e-21 103.6 86 55.8
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.0e-20 103.2 82 61.0
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-20 103.2 81 59.3
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-20 103.2 81 59.3
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-20 101.7 81 59.3
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-20 101.7 81 60.5
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 3.0e-20 101.7 81 59.3
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 3.0e-20 101.7 62 75.8
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 3.9e-20 101.3 81 59.3
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 3.9e-20 101.3 81 59.3
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 5.1e-20 100.9 81 59.3
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 6.7e-20 100.5 61 78.7
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 6.7e-20 100.5 79 60.8
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-19 99.8 79 60.8
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-19 99.8 79 60.8
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.1e-19 99.8 81 56.8
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.5e-19 99.4 81 59.3
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-19 99.4 81 59.3
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.5e-19 99.4 81 59.3
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 1.5e-19 99.4 85 54.1
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.5e-19 99.4 67 71.6
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.9e-19 99.0 68 64.7
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-19 98.6 81 56.8
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-19 98.6 79 59.5
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.6e-18 95.9 80 61.2
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-18 94.7 81 58.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 3.7e-18 94.7 79 57.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.8e-17 92.4 88 52.3
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.1e-17 91.3 84 51.2
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 6.9e-17 90.5 81 58.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 1.5e-16 89.4 73 57.5
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 5.9e-16 87.4 72 61.1
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 5.9e-16 87.4 72 61.1
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 7.7e-16 87.0 72 61.1
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 7.7e-16 87.0 59 71.2
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.7e-15 85.9 72 59.7
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 2.5e-14 82.0 57 68.4
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 5.5e-14 80.9 80 48.8
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 1.8e-12 75.9 84 47.6
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 3.9e-12 74.7 79 51.9
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 9.7e-11 70.1 64 54.7
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 2.2e-10 68.9 59 55.9
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-09 66.6 81 48.1
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 1.8e-09 65.9 44 72.7
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 5.9e-08 60.8 69 42.0
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 1.0e-07 60.1 35 82.9
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.0e-07 60.1 79 39.2
BraA10t43343Z Brassica rapa HOM05D004709 ORTHO05D005669 3.2e-06 55.1 48 56.2


User provided reference genes

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