Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.3e-32 142.5 72 100.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.6e-30 133.3 68 97.1
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 4.2e-28 127.5 68 91.2
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 4.2e-28 127.5 68 91.2
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 9.3e-28 126.3 68 89.7
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 3.3e-25 117.9 68 83.8
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.3e-24 115.9 68 82.4
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 4.8e-24 114.0 68 82.4
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 4.8e-24 114.0 68 82.4
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 4.8e-24 114.0 68 82.4
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.4e-23 112.5 68 77.9
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 1.4e-23 112.5 68 80.9
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 4.0e-23 110.9 68 80.9
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.2e-22 109.4 68 77.9
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.2e-22 109.4 68 77.9
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.5e-22 109.0 69 75.4
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.6e-22 108.2 68 76.5
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 7.6e-22 106.7 68 76.5
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 1.0e-21 106.3 67 74.6
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.0e-21 106.3 68 73.5
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.0e-21 106.3 68 76.5
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.0e-21 106.3 68 73.5
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 1.0e-21 106.3 68 73.5
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.0e-21 106.3 68 73.5
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.3e-21 105.9 68 73.5
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 2.2e-21 105.1 68 72.1
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.2e-21 105.1 68 75.0
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 2.9e-21 104.8 68 72.1
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 3.8e-21 104.4 68 70.6
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 5.0e-21 104.0 68 72.1
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 6.5e-21 103.6 67 73.1
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 6.5e-21 103.6 68 73.5
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 6.5e-21 103.6 67 73.1
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 8.4e-21 103.2 68 72.1
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.1e-20 102.8 68 70.6
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.1e-20 102.8 68 73.5
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.1e-20 102.8 68 75.0
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.1e-20 102.8 68 72.1
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.1e-20 102.8 68 73.5
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.1e-20 102.8 68 73.5
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.4e-20 102.4 68 70.6
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.9e-20 102.1 68 70.6
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 2.5e-20 101.7 68 69.1
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 4.2e-20 100.9 68 67.6
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 5.5e-20 100.5 67 70.1
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 5.5e-20 100.5 68 64.7
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 7.1e-20 100.1 67 73.1
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 9.3e-20 99.8 68 69.1
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 9.3e-20 99.8 68 69.1
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.2e-19 99.4 68 70.6
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 1.2e-19 99.4 68 67.6
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 2.1e-19 98.6 68 67.6
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 2.1e-19 98.6 68 69.1
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.7e-19 98.2 68 72.1
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 2.7e-19 98.2 65 72.3
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.7e-19 98.2 65 70.8
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 2.7e-19 98.2 68 69.1
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.5e-19 97.8 67 68.7
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 4.6e-19 97.4 67 67.2
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 4.6e-19 97.4 68 67.6
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 4.6e-19 97.4 67 68.7
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 4.6e-19 97.4 67 68.7
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 6.1e-19 97.1 67 65.7
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 6.1e-19 97.1 65 69.2
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 1.3e-18 95.9 68 66.2
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 3.9e-18 94.4 68 64.7
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 8.7e-18 93.2 68 63.2
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.9e-17 92.0 67 62.7
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.9e-17 92.0 68 63.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 5.7e-17 90.5 68 67.6
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 7.4e-17 90.1 67 62.7
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 9.7e-17 89.7 68 61.8
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.6e-16 89.0 70 61.4
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.6e-16 89.0 70 61.4
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.8e-16 88.2 70 60.0
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 6.3e-16 87.0 67 62.7
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.1e-15 86.3 67 64.2
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.8e-15 85.5 67 61.2
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.8e-15 85.5 67 61.2
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.8e-15 85.5 67 61.2
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.8e-15 85.5 67 59.7
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 3.1e-15 84.7 68 60.3
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 5.3e-15 84.0 67 59.7
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 5.3e-15 84.0 67 59.7
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 6.9e-15 83.6 67 59.7
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 9.0e-15 83.2 67 59.7
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.0e-14 82.0 68 61.8
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 2.6e-14 81.6 67 59.7
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.0e-13 79.7 67 55.2
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.0e-13 79.7 67 55.2
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 1.3e-13 79.3 67 55.2
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 1.3e-13 79.3 67 55.2
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 1.7e-13 79.0 67 55.2
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 3.8e-13 77.8 69 55.1
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 8.5e-13 76.6 67 56.7
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 3.2e-12 74.7 67 55.2
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 5.5e-12 73.9 68 57.4
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 9.4e-12 73.2 68 52.9
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.6e-11 72.4 68 64.7
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.7e-11 71.6 68 52.9
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 6.1e-11 70.5 68 54.4
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 2.0e-06 55.5 68 42.6
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 2.6e-06 55.1 67 44.8
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 2.6e-06 55.1 77 37.7


User provided reference genes

Program Settings