Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.4e-242 840.9 424 100.0
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.9e-223 777.3 456 87.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-181 640.2 389 84.6
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.9e-181 639.4 389 83.3
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 7.3e-181 637.5 389 83.0
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.0e-174 615.5 384 82.0
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.9e-170 600.5 389 79.7
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.1e-155 553.9 411 69.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.9e-153 545.8 382 72.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 3.8e-153 545.4 389 70.4
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.8e-153 545.4 389 70.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 4.9e-153 545.0 389 70.7
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.6e-151 540.0 405 67.2
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.7e-151 539.3 446 64.1
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.0e-151 538.1 389 70.7
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.0e-150 537.3 383 71.0
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.3e-150 537.0 389 68.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 5.7e-149 531.6 408 66.4
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.8e-147 526.6 389 69.2
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 5.3e-147 525.0 383 68.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 3.8e-145 518.8 383 67.4
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-144 516.9 365 69.3
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.2e-144 515.8 383 69.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 4.2e-144 515.4 389 68.1
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 5.5e-144 515.0 389 64.5
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 5.5e-144 515.0 388 66.2
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 9.4e-144 514.2 385 65.5
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.6e-143 513.5 388 66.0
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.6e-143 513.5 407 64.6
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.1e-143 513.1 388 66.0
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.1e-143 513.1 392 66.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.7e-143 512.7 388 65.7
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.0e-142 510.8 390 66.9
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.0e-142 510.8 390 66.9
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.0e-142 509.2 388 68.0
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 6.7e-142 508.1 392 66.3
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 8.8e-142 507.7 389 65.6
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.1e-141 507.3 390 65.9
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.5e-141 506.9 382 66.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.9e-141 506.5 389 64.0
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.5e-141 506.1 391 66.5
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.3e-141 505.4 388 65.2
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.3e-141 505.4 388 65.2
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 5.7e-141 505.0 411 63.5
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 7.4e-141 504.6 384 65.1
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 9.7e-141 504.2 445 58.9
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.3e-140 503.8 389 65.0
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.8e-140 502.7 383 66.3
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 6.3e-140 501.5 383 66.1
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.1e-139 500.7 375 66.7
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 3.1e-139 499.2 388 64.9
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 9.1e-139 497.7 384 66.1
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.2e-138 497.3 390 64.6
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.5e-138 496.9 406 61.6
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 7.7e-138 494.6 384 63.8
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 7.7e-138 494.6 394 64.0
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 8.5e-137 491.1 383 64.2
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.1e-136 490.7 408 62.7
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.4e-136 490.3 389 62.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.9e-136 490.0 411 61.3
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.5e-136 489.6 383 63.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.2e-136 488.8 394 63.7
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 5.5e-136 488.4 411 61.1
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 5.5e-136 488.4 383 62.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.5e-136 488.4 384 62.8
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 5.5e-136 488.4 394 62.2
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.6e-135 486.9 389 62.2
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-135 486.5 408 61.3
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-135 486.5 408 61.3
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 2.1e-135 486.5 394 61.7
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.7e-135 485.3 384 62.8
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 4.7e-135 485.3 383 62.9
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 6.1e-135 485.0 383 62.9
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.1e-135 485.0 383 62.9
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 6.1e-135 485.0 383 63.2
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 6.1e-135 485.0 383 64.0
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 6.1e-135 485.0 383 64.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 6.1e-135 485.0 389 64.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.1e-135 485.0 389 62.5
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 7.9e-135 484.6 383 62.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.0e-134 484.2 383 62.9
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.8e-134 483.4 384 62.0
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-134 483.0 383 62.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-134 483.0 383 62.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.3e-134 483.0 383 62.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.0e-134 482.6 388 61.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.7e-134 481.5 389 62.5
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-133 480.7 384 63.3
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.5e-133 480.3 393 61.1
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-133 479.9 384 63.0
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 3.3e-133 479.2 384 63.0
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 3.3e-133 479.2 384 63.0
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.3e-133 479.2 384 62.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.4e-133 478.8 383 62.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 4.4e-133 478.8 396 60.6
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.7e-133 478.4 384 63.0
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 7.4e-133 478.0 391 60.9
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 9.7e-133 477.6 389 62.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.3e-132 477.2 351 70.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.8e-132 476.1 383 61.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.7e-132 475.7 431 57.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.3e-131 471.9 375 61.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.0e-130 469.9 384 62.5
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.9e-129 466.1 382 60.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.9e-129 466.1 405 59.0
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.4e-128 463.8 415 57.1
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 4.2e-128 462.2 404 60.4
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 8.0e-127 458.0 393 61.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.9e-126 455.7 429 55.5
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.7e-126 454.9 482 52.3
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.7e-126 454.9 376 60.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.6e-125 453.0 377 60.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 6.3e-124 448.4 389 58.6
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.1e-123 444.5 412 55.8
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.6e-119 432.6 383 57.7
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 5.3e-115 418.7 383 55.9
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-110 404.1 354 59.9
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.5e-109 400.6 391 52.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 2.0e-109 400.2 375 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.5e-104 383.3 376 50.0
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 4.0e-102 375.9 386 50.8
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 6.8e-102 375.2 381 50.9
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 8.9e-102 374.8 383 50.7
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.0e-101 373.6 391 48.8
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.6e-101 373.2 399 53.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.8e-101 371.3 360 53.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-99 367.5 391 48.3
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.7e-98 363.2 278 65.1
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.7e-95 352.4 382 50.8
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.6e-85 320.1 385 47.5
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.2e-82 311.2 252 60.7
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.3e-81 307.8 226 69.0
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.1e-75 288.1 223 64.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.1e-75 285.4 269 57.6
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.6e-71 274.2 361 42.9
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.1e-57 226.1 142 74.6
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 3.3e-56 223.4 198 55.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.8e-55 219.5 360 38.3
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.4e-52 209.1 142 70.4
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.7e-49 198.7 138 73.2
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.0e-45 187.6 226 49.1
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.0e-36 158.7 127 61.4
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.8e-36 156.8 94 81.9
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.9e-33 146.7 113 60.2
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.8e-31 140.6 110 66.4
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.8e-31 140.6 160 50.0
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.1e-27 128.6 111 63.1
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.6e-26 124.8 77 74.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.8e-25 119.0 101 60.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.1e-24 118.6 99 58.6
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.2e-19 100.5 63 81.0
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-18 98.2 68 69.1
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.9e-17 93.6 81 51.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 9.1e-14 82.4 51 78.4
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 4.5e-13 80.1 58 69.0
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.0e-12 79.0 43 79.1
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 4.1e-06 57.0 37 70.3


User provided reference genes

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