Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 6.0e-65 250.8 133 100.0
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 2.9e-51 205.3 133 85.0
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 4.4e-39 164.9 136 72.1
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 4.8e-38 161.4 133 71.4
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 1.8e-37 159.5 133 70.7
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.8e-37 159.5 132 71.2
Peaxi162Scf00080g00151 Petunia axillaris HOM05D007617 ORTHO05D007195 1.6e-25 119.8 131 59.5
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 8.0e-25 117.5 140 60.0
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 1.8e-24 116.3 140 59.3
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 7.5e-23 110.9 138 57.2
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 3.3e-18 95.5 133 49.6
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 2.8e-17 92.4 139 48.9
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 3.0e-16 89.0 142 52.1
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 1.5e-15 86.7 133 45.9
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 9.8e-15 84.0 142 47.2
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 1.3e-14 83.6 137 48.2
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 1.7e-14 83.2 140 47.1
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 1.8e-13 79.7 146 43.8
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 3.2e-13 79.0 163 40.5
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 1.6e-12 76.6 138 45.7
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 1.0e-11 73.9 133 46.6
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 1.7e-11 73.2 133 44.4
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 2.3e-11 72.8 139 43.9
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 2.9e-11 72.4 143 42.0
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 2.9e-11 72.4 134 41.0
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 2.9e-11 72.4 133 43.6
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 5.0e-11 71.6 134 43.3
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 6.6e-11 71.2 128 43.8
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 6.6e-11 71.2 142 42.3
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 1.1e-10 70.5 139 41.0
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.1e-10 70.5 140 39.3
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.9e-10 69.7 69 58.0
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.5e-10 69.3 139 41.0
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 4.3e-10 68.6 131 42.7
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 4.3e-10 68.6 132 42.4
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.6e-10 68.2 139 41.0
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 7.3e-10 67.8 135 43.0
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 7.3e-10 67.8 70 60.0
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 7.3e-10 67.8 68 61.8
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 1.2e-09 67.0 142 43.0
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 1.2e-09 67.0 133 41.4
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 1.6e-09 66.6 65 63.1
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 2.8e-09 65.9 65 63.1
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 2.8e-09 65.9 143 39.2
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 3.6e-09 65.5 65 58.5
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 3.6e-09 65.5 65 58.5
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 4.7e-09 65.1 139 39.6
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 4.7e-09 65.1 137 40.1
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 8.0e-09 64.3 127 42.5
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 1.0e-08 63.9 135 40.0
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 1.0e-08 63.9 72 55.6
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 2.3e-08 62.8 65 56.9
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 2.3e-08 62.8 134 42.5
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 3.1e-08 62.4 129 39.5
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 4.0e-08 62.0 63 60.3
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 5.2e-08 61.6 140 38.6
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 5.2e-08 61.6 65 53.8
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 8.9e-08 60.8 143 39.2
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 8.9e-08 60.8 142 40.1
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 1.2e-07 60.5 65 55.4
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 1.5e-07 60.1 136 38.2
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 1.5e-07 60.1 144 41.0
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.5e-07 60.1 142 38.0
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.0e-07 59.7 139 38.8
AL5G27740 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 2.6e-07 59.3 142 39.4
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 3.4e-07 58.9 137 38.0
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 4.4e-07 58.5 141 39.0
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 5.8e-07 58.2 139 38.1
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 7.5e-07 57.8 130 42.3
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 9.8e-07 57.4 76 55.3
BcaB01g00826 Brassica carinata HOM05D010525 ORTHO05D007195 1.3e-06 57.0 145 38.6
BraA06t25018Z Brassica rapa HOM05D010525 ORTHO05D007195 1.3e-06 57.0 137 38.0
A06p19360 Brassica napus HOM05D010525 ORTHO05D007195 1.7e-06 56.6 133 37.6
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 1.7e-06 56.6 138 41.3
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 1.7e-06 56.6 143 36.4
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 2.9e-06 55.8 73 52.1
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 2.9e-06 55.8 136 37.5
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 3.7e-06 55.5 139 34.5
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 3.7e-06 55.5 134 40.3
BcaC07g39315 Brassica carinata HOM05D010525 ORTHO05D007195 4.9e-06 55.1 144 38.2
C08p23300 Brassica napus HOM05D010525 ORTHO05D007195 4.9e-06 55.1 144 38.2
BolC8t49961H Brassica oleracea HOM05D010525 ORTHO05D007195 4.9e-06 55.1 144 38.2
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 4.9e-06 55.1 143 39.9
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 6.4e-06 54.7 134 38.1
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 8.3e-06 54.3 133 40.6


User provided reference genes

Program Settings