Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 2022.7 1005 100.0
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1743.8 1008 88.4
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 0.0e+00 1536.2 1001 77.6
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1523.1 1003 77.9
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 0.0e+00 1424.5 999 72.7
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 0.0e+00 1347.8 1004 71.2
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1097.4 1007 56.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 7.8e-290 1000.7 1001 52.6
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 1.9e-288 996.1 1004 52.0
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.5e-285 986.5 1003 52.2
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 3.3e-280 968.8 1004 50.7
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 1.5e-277 959.9 1002 50.2
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 8.1e-271 937.6 986 50.4
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 4.0e-270 935.3 1004 49.3
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 2.0e-269 932.9 1004 49.1
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.2e-268 929.5 1020 47.6
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 6.7e-265 917.9 1005 47.9
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 2.5e-264 916.0 1003 48.0
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 7.4e-264 914.4 608 76.5
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.6e-263 913.3 1012 48.1
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.3e-260 903.7 990 48.6
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 2.9e-260 902.5 1002 46.8
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 4.9e-260 901.7 1001 48.5
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 3.1e-254 882.5 997 46.6
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.0e-252 877.5 1002 47.2
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 4.3e-248 862.1 1003 46.1
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.4e-246 856.3 1003 45.7
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 3.1e-246 855.9 1097 43.7
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.6e-242 843.6 1010 44.7
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.6e-242 843.6 1010 44.7
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.0e-241 839.3 1010 45.0
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 2.3e-233 813.1 1006 44.8
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.4e-230 803.9 1007 44.5
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 1.4e-227 793.9 992 45.1
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.9e-227 793.5 1004 42.6
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 2.5e-227 793.1 1011 44.2
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 7.2e-227 791.6 1003 42.5
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 4.7e-226 788.9 1001 44.0
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 5.2e-225 785.4 1006 43.2
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 4.4e-224 782.3 998 43.2
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 3.7e-223 779.2 1020 44.3
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 3.5e-221 772.7 1007 42.1
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.0e-220 771.2 1011 40.8
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 6.5e-220 768.5 873 46.0
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 3.2e-219 766.1 1005 42.6
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.6e-218 763.8 1000 42.0
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.8e-217 760.4 1009 41.9
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 5.2e-217 758.8 1009 41.8
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 2.0e-216 756.9 1000 42.1
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 4.4e-216 755.7 1002 41.1
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 1.7e-215 753.8 1002 42.2
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.2e-215 753.4 997 42.5
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.7e-215 752.7 1006 42.4
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.1e-214 749.6 1012 41.3
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.6e-213 747.3 1001 40.4
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.0e-213 746.9 1001 41.0
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 2.2e-212 743.4 1001 41.9
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 8.5e-212 741.5 1009 42.4
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.1e-211 741.1 1001 39.5
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.9e-211 740.3 1003 39.6
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 2.5e-211 740.0 1003 42.0
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 9.4e-211 738.0 1016 42.0
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.1e-210 736.9 962 42.6
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 5.4e-206 722.2 1003 39.6
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.0e-205 720.3 1000 39.0
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.3e-204 717.6 1000 39.0
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.7e-204 717.2 953 41.9
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 3.0e-201 706.4 926 43.6
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 2.8e-199 699.9 782 46.4
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 9.2e-198 694.9 1002 39.2
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 6.8e-193 678.7 786 45.7
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.2e-191 673.7 775 46.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 3.9e-188 662.9 998 41.1
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.7e-186 656.0 960 39.7
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 5.2e-185 652.5 780 43.8
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.4e-182 644.4 395 83.3
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 7.5e-176 622.1 879 39.6
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.2e-174 616.7 994 37.7
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.0e-172 611.7 776 41.9
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 6.6e-172 609.0 795 42.6
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 4.2e-166 589.7 1000 34.4
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 9.2e-166 588.6 786 42.6
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 2.1e-162 577.4 1000 35.7
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 3.4e-160 570.1 1004 34.3
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 2.9e-151 540.4 744 39.4
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.4e-150 538.1 751 41.7
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.2e-150 537.0 754 39.8
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 4.6e-149 533.1 1029 33.6
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 6.7e-132 476.1 747 36.8
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.4e-129 468.4 612 43.1
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 7.4e-115 419.5 475 50.5
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 8.8e-108 396.0 785 32.4
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-103 382.1 235 81.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.5e-102 378.6 247 79.4
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 7.0e-97 359.8 454 43.4
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 8.6e-79 299.7 359 46.5
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.2e-75 289.3 964 26.5
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.9e-74 284.6 449 41.2
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 5.2e-68 263.8 1050 24.4
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.4e-65 255.8 1031 25.7
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.1e-62 246.1 488 34.8
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 9.9e-51 206.5 396 33.8
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 1.5e-46 192.6 143 62.9
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.3e-46 191.4 191 48.2
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.2e-43 183.0 348 29.6
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 3.4e-43 181.4 147 51.7
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.9e-42 177.6 173 49.1
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 4.6e-40 171.0 140 55.0
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.0e-39 168.3 190 48.4
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.5e-38 165.2 185 46.5
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.3e-38 164.9 147 50.3
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.6e-37 161.4 200 42.0
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.6e-32 146.0 142 49.3
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 2.5e-30 138.7 253 31.2
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 5.8e-27 127.5 148 46.6
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 1.3e-26 126.3 148 45.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 6.0e-24 117.5 155 39.4
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 3.1e-20 105.1 77 61.0
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 6.5e-18 97.4 47 89.4
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 5.1e-15 87.8 92 43.5
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.9e-14 85.9 172 36.0
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 4.3e-14 84.7 155 32.3
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 9.7e-14 83.6 68 52.9
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 5.5e-09 67.8 126 34.9


User provided reference genes

Program Settings