Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.8e-299 1031.2 524 100.0
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.6e-284 981.5 536 92.2
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 1.7e-243 845.9 533 81.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 2.3e-229 798.9 547 78.2
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 9.6e-223 776.9 536 75.0
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 1.4e-218 763.1 536 74.1
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 3.7e-158 562.4 556 56.7
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 3.6e-153 545.8 560 54.6
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 1.8e-152 543.5 559 55.5
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 2.4e-149 533.1 530 55.5
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 1.6e-148 530.4 547 54.1
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.9e-148 528.5 518 57.9
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.0e-147 527.7 560 54.8
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.1e-146 524.2 443 61.2
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.1e-146 524.2 558 54.7
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 7.5e-143 511.5 552 53.1
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 6.3e-142 508.4 614 48.9
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 4.5e-140 502.3 521 53.9
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 3.8e-139 499.2 430 60.7
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.9e-138 496.9 555 52.4
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 3.6e-137 492.7 501 55.5
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 4.7e-137 492.3 532 53.0
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 1.0e-136 491.1 523 52.6
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 2.3e-136 490.0 560 50.9
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 8.9e-136 488.0 528 50.9
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 5.7e-135 485.3 497 54.7
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 3.2e-133 479.6 487 53.6
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.2e-132 477.6 541 51.0
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.9e-130 470.3 562 50.0
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 2.1e-129 466.8 520 52.9
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.1e-128 463.0 691 42.8
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 4.0e-128 462.6 523 51.6
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.2e-128 462.2 399 61.4
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 5.2e-128 462.2 546 51.1
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.2e-127 461.1 481 53.6
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.0e-127 460.3 486 53.1
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 2.0e-127 460.3 564 50.7
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 4.9e-126 455.7 524 50.8
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 1.1e-125 454.5 577 49.2
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 3.2e-125 453.0 544 49.6
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 5.4e-125 452.2 519 50.9
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 5.4e-125 452.2 549 49.0
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 1.2e-124 451.1 585 48.0
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.0e-124 450.3 550 48.9
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 2.7e-124 449.9 521 50.3
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 3.0e-123 446.4 663 43.9
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.9e-122 443.7 518 49.8
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.6e-121 440.7 518 49.0
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 4.7e-121 439.1 441 54.0
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 3.1e-120 436.4 444 55.0
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 5.2e-120 435.6 539 49.2
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 1.2e-119 434.5 541 48.8
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.7e-118 429.5 536 47.8
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 6.4e-118 428.7 537 46.7
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 5.4e-117 425.6 551 47.0
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 7.1e-117 425.2 566 49.1
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 2.7e-116 423.3 527 48.0
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 4.6e-116 422.5 537 48.2
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.0e-115 421.4 566 48.9
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.0e-115 421.4 566 48.9
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 1.7e-115 420.6 445 54.2
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 2.3e-115 420.2 436 54.4
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 3.9e-115 419.5 498 49.8
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 9.5e-114 414.8 546 47.1
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 6.2e-113 412.1 384 59.6
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 6.8e-112 408.7 540 47.6
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 5.8e-111 405.6 451 53.2
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 3.8e-110 402.9 533 46.2
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.1e-109 401.4 541 46.0
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 2.7e-108 396.7 511 47.9
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 1.0e-107 394.8 519 46.6
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.7e-107 394.0 540 46.1
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 3.3e-106 389.8 407 51.1
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 7.3e-106 388.7 444 51.4
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 3.6e-105 386.3 440 51.8
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 3.4e-103 379.8 432 50.5
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 7.6e-103 378.6 540 45.0
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.3e-102 377.9 423 50.6
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.4e-101 374.4 402 50.5
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 9.3e-101 371.7 413 49.6
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 1.1e-98 364.8 441 48.5
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 1.9e-98 364.0 517 45.8
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.0e-95 354.0 529 41.2
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.0e-95 354.0 528 43.2
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 3.4e-95 353.2 525 44.0
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 1.3e-94 351.3 528 40.9
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 6.4e-94 349.0 516 44.0
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 8.4e-94 348.6 422 48.1
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.9e-93 347.4 563 43.0
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 3.0e-91 340.1 384 50.8
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 4.3e-90 336.3 281 62.3
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 9.6e-90 335.1 525 42.1
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 1.6e-89 334.3 529 42.9
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.1e-88 331.6 440 44.3
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 4.0e-88 329.7 443 44.9
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 5.3e-88 329.3 443 44.7
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 5.3e-88 329.3 395 47.8
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 6.9e-88 328.9 440 44.8
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.0e-87 327.4 490 43.1
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.4e-85 320.5 493 41.4
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 4.2e-85 319.7 390 46.2
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 4.2e-85 319.7 390 46.2
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 2.1e-84 317.4 433 42.7
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.7e-84 317.0 359 48.7
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 4.6e-84 316.2 528 40.0
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 3.9e-83 313.2 383 49.1
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 5.1e-83 312.8 434 44.9
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.5e-82 311.2 353 48.2
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 4.3e-82 309.7 405 45.2
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 5.6e-82 309.3 482 41.9
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 9.6e-82 308.5 477 40.3
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 3.7e-81 306.6 233 64.8
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 1.4e-80 304.7 400 45.5
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.8e-80 304.3 440 43.4
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 3.1e-80 303.5 396 46.0
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.2e-79 301.6 420 44.8
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 2.6e-79 300.4 382 45.8
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 5.8e-79 299.3 323 48.3
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 7.6e-79 298.9 380 47.1
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 7.6e-79 298.9 381 46.2
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 7.6e-79 298.9 381 46.2
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 7.6e-79 298.9 366 47.0
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 8.4e-78 295.4 394 43.9
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.5e-76 290.0 367 50.1
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.8e-75 287.7 417 42.2
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 6.7e-75 285.8 371 46.1
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.9e-74 284.3 475 38.3
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 3.7e-73 280.0 320 50.9
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.4e-72 278.1 361 49.9
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 1.0e-70 271.9 177 78.0
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 7.2e-69 265.8 390 42.3
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 6.1e-68 262.7 347 43.8
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 2.9e-62 243.8 190 64.2
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.2e-61 240.0 339 45.4
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.4e-59 235.0 274 51.1
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.3e-57 228.4 382 37.4
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.8e-56 224.6 267 45.7
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 1.1e-53 215.3 210 53.8
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 1.4e-53 214.9 574 32.4
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.5e-47 193.7 259 41.7
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 8.5e-38 162.5 201 49.3
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 6.1e-36 156.4 415 32.3
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 2.3e-35 154.5 445 29.2
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 5.7e-34 149.8 279 39.1
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 4.9e-25 120.2 221 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.7e-23 114.4 204 35.3
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 1.0e-19 102.4 385 28.1
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.4e-19 102.1 120 45.0
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.5e-13 81.3 224 33.0
Actinidia19277 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.9e-09 67.8 41 70.7
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 3.2e-08 64.3 46 65.2
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 1.0e-06 59.3 95 35.8


User provided reference genes

Program Settings