Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 5.3e-63 244.2 124 100.0
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 2.6e-30 135.6 94 72.3
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 5.9e-30 134.4 82 82.9
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 5.0e-29 131.3 93 72.0
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.1e-28 130.2 92 71.7
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.5e-28 129.8 93 68.8
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.5e-25 119.8 74 71.6
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 3.3e-25 118.6 74 71.6
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.8e-24 115.5 92 63.0
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.8e-24 115.5 92 64.1
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.4e-23 112.5 92 63.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 2.7e-22 109.0 94 58.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 4.5e-22 108.2 95 58.9
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 8.5e-21 104.0 104 52.9
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 8.5e-21 104.0 96 52.1
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.1e-20 103.6 98 56.1
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 5.5e-20 101.3 104 51.9
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.4e-20 100.5 107 49.5
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.2e-19 100.1 99 58.6
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.2e-19 100.1 89 52.8
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.1e-19 99.4 74 64.9
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.7e-19 99.0 92 54.3
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.0e-18 97.1 97 52.6
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.4e-18 96.7 96 52.1
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.3e-18 95.9 94 52.1
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 2.3e-18 95.9 89 50.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 3.0e-18 95.5 99 50.5
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 5.2e-18 94.7 86 53.5
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 6.8e-18 94.4 96 52.1
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 6.8e-18 94.4 89 48.3
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 6.8e-18 94.4 93 52.7
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 8.8e-18 94.0 79 51.9
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 8.8e-18 94.0 94 51.1
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 8.8e-18 94.0 82 48.8
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-17 93.2 91 51.6
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.5e-17 93.2 62 64.5
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.0e-17 92.8 66 59.1
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 2.0e-17 92.8 65 63.1
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 2.0e-17 92.8 95 53.7
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.0e-17 92.8 92 50.0
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.0e-17 92.8 62 62.9
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.6e-17 92.4 97 51.5
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.6e-17 92.4 97 51.5
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.6e-17 92.4 97 51.5
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.4e-17 91.7 90 51.1
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 4.4e-17 91.7 86 51.2
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 4.4e-17 91.7 87 51.7
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.7e-17 91.3 89 50.6
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 5.7e-17 91.3 91 50.5
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 5.7e-17 91.3 94 51.1
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 7.5e-17 90.9 90 50.0
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 7.5e-17 90.9 94 45.7
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 7.5e-17 90.9 94 45.7
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 7.5e-17 90.9 84 51.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 9.8e-17 90.5 88 48.9
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 9.8e-17 90.5 93 50.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.3e-16 90.1 61 63.9
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.7e-16 89.7 95 49.5
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 2.2e-16 89.4 105 45.7
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.2e-16 89.4 65 60.0
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 2.8e-16 89.0 92 51.1
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 3.7e-16 88.6 87 48.3
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 3.7e-16 88.6 94 51.1
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 4.8e-16 88.2 98 44.9
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 4.8e-16 88.2 65 60.0
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 4.8e-16 88.2 102 47.1
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 4.8e-16 88.2 84 53.6
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 6.3e-16 87.8 65 58.5
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 6.3e-16 87.8 90 53.3
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 8.3e-16 87.4 84 53.6
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 8.3e-16 87.4 94 50.0
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-15 87.0 94 45.7
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.1e-15 87.0 83 45.8
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.1e-15 87.0 83 49.4
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 1.4e-15 86.7 87 50.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.4e-15 86.7 93 43.0
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.4e-15 86.7 91 49.5
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.8e-15 86.3 80 50.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.8e-15 86.3 89 50.6
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.8e-15 86.3 89 50.6
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 1.8e-15 86.3 96 46.9
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.8e-15 86.3 87 50.6
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 2.4e-15 85.9 81 53.1
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 3.1e-15 85.5 65 56.9
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 3.1e-15 85.5 65 53.8
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 5.4e-15 84.7 80 48.8
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 7.0e-15 84.3 79 50.6
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 9.1e-15 84.0 90 47.8
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.1e-15 84.0 89 48.3
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-14 83.6 97 46.4
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-14 83.6 97 46.4
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-14 83.6 94 45.7
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.2e-14 83.6 97 46.4
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 1.2e-14 83.6 97 46.4
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 1.2e-14 83.6 94 45.7
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.6e-14 83.2 65 58.5
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.6e-14 83.2 81 51.9
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.0e-14 82.8 94 45.7
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 2.0e-14 82.8 91 42.9
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 3.5e-14 82.0 97 44.3
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.5e-14 82.0 78 48.7
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.5e-14 82.0 88 47.7
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 4.5e-14 81.6 78 48.7
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 1.0e-13 80.5 63 57.1
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.0e-13 80.5 81 45.7
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.2e-13 79.3 90 44.4
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.9e-13 79.0 66 51.5
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.9e-13 79.0 109 38.5
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.8e-13 78.6 63 50.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.0e-13 78.2 63 50.8
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.1e-12 77.0 63 49.2
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.5e-12 75.9 88 40.9
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.5e-12 75.9 89 42.7
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.5e-12 75.9 80 42.5
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.2e-12 75.5 51 58.8
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 9.4e-12 73.9 90 41.1
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.7e-11 71.6 65 49.2
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 8.0e-11 70.9 81 43.2
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 8.0e-11 70.9 65 49.2
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.8e-10 69.7 94 39.4
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.3e-10 69.3 93 39.8
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 5.2e-10 68.2 65 44.6
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 6.8e-10 67.8 87 40.2
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 8.8e-10 67.4 92 39.1
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.5e-09 66.6 87 39.1
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.6e-09 65.9 90 35.6
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 2.6e-09 65.9 65 43.1
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 2.6e-09 65.9 65 43.1
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 5.7e-09 64.7 100 38.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 7.5e-09 64.3 79 38.0
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 7.5e-09 64.3 65 41.5
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 9.8e-09 63.9 84 40.5
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-08 63.2 90 35.6
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.7e-08 63.2 90 35.6
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 2.2e-08 62.8 78 44.9
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.7e-08 62.0 80 37.5
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 5.4e-07 58.2 60 43.3
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 9.2e-07 57.4 75 36.0


User provided reference genes

Program Settings