Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 0.0e+00 1607.0 813 100.0
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 0.0e+00 1354.3 819 84.9
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 0.0e+00 1182.2 833 75.5
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 0.0e+00 1177.2 830 75.3
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 0.0e+00 1172.1 833 74.5
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 0.0e+00 1162.5 833 74.4
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.9e-262 909.4 855 60.6
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 8.3e-258 894.0 618 75.7
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 7.0e-257 891.0 840 60.6
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 9.2e-257 890.6 839 60.8
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 5.4e-249 864.8 880 57.5
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 2.4e-244 849.4 881 57.1
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 2.2e-234 816.2 851 57.0
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 5.7e-174 615.5 838 45.6
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 6.3e-173 612.1 861 45.1
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 1.6e-163 580.9 896 42.9
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 1.4e-156 557.8 923 43.3
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 7.0e-156 555.4 940 41.4
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 2.0e-150 537.3 945 41.2
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.4e-150 536.6 864 42.5
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 2.9e-149 533.5 873 41.9
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 2.3e-143 513.8 890 41.7
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 2.7e-139 500.4 1125 35.4
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 3.3e-137 493.4 967 37.7
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 6.8e-135 485.7 1065 36.3
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.9e-132 477.6 865 40.8
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 6.0e-131 472.6 891 40.1
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 6.0e-131 472.6 875 39.9
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 5.1e-130 469.5 871 39.5
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 4.7e-128 463.0 983 37.1
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.3e-125 454.9 969 37.8
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 2.2e-125 454.1 1064 34.8
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 4.2e-124 449.9 881 38.5
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 4.6e-123 446.4 844 38.5
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 5.1e-122 443.0 825 38.4
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 8.7e-122 442.2 1053 34.9
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 2.5e-121 440.7 986 35.4
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 5.6e-121 439.5 866 38.8
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 7.3e-121 439.1 973 36.0
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 2.1e-120 437.6 1063 34.1
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 8.1e-120 435.6 1169 32.5
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 5.3e-119 433.0 292 75.0
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 6.9e-119 432.6 1271 31.2
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 1.2e-118 431.8 1211 33.2
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 2.0e-118 431.0 1068 34.6
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.8e-117 426.8 947 35.6
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 2.7e-115 420.6 963 34.8
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 7.8e-115 419.1 996 35.5
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.7e-114 417.9 1039 34.9
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 3.0e-114 417.2 1182 32.5
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 1.6e-112 411.4 951 36.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.1e-111 408.7 1010 34.8
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.1e-111 408.7 1021 33.9
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.4e-111 408.3 948 36.4
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 3.4e-110 403.7 1011 34.8
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 7.6e-110 402.5 1172 31.3
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 4.9e-109 399.8 963 34.5
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.4e-109 399.4 1028 33.9
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 8.4e-109 399.1 1055 32.2
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 4.2e-108 396.7 997 35.0
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 1.1e-105 388.7 1227 31.1
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 1.9e-105 387.9 1048 32.2
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 3.3e-105 387.1 1118 31.9
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 3.3e-105 387.1 1051 33.5
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 2.4e-103 380.9 1209 29.3
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 3.1e-103 380.6 974 33.4
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 1.5e-102 378.3 957 32.8
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 2.6e-102 377.5 971 34.3
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.9e-100 371.3 1037 32.9
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.2e-99 368.6 1204 30.1
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.0e-98 365.5 1074 31.3
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.0e-98 365.5 1252 29.3
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 3.9e-98 363.6 1085 31.2
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 3.3e-97 360.5 824 35.2
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 2.8e-96 357.5 601 40.9
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.4e-95 355.1 1149 29.7
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 9.0e-95 352.4 1095 29.4
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 9.0e-95 352.4 613 41.3
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 2.0e-94 351.3 815 34.4
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 1.3e-90 338.6 913 31.8
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 2.6e-86 324.3 805 32.8
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 1.0e-85 322.4 432 46.5
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 6.7e-82 309.7 598 38.0
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 6.3e-80 303.1 876 33.6
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 4.1e-79 300.4 888 31.0
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 1.2e-78 298.9 381 47.2
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 1.0e-77 295.8 582 37.8
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 7.2e-76 289.7 696 36.4
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 7.2e-76 289.7 577 37.3
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 1.6e-75 288.5 581 38.2
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 1.6e-75 288.5 633 37.0
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 1.6e-75 288.5 559 37.7
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 4.7e-75 287.0 602 35.2
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 1.8e-74 285.0 633 36.8
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 2.3e-74 284.6 633 37.1
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 2.3e-74 284.6 754 33.8
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 3.7e-72 277.3 325 52.0
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 2.6e-70 271.2 382 46.6
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 5.9e-70 270.0 1097 27.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 3.8e-69 267.3 388 45.4
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 8.5e-69 266.2 576 36.6
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 5.5e-68 263.5 579 36.1
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 7.2e-68 263.1 1097 27.1
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 9.4e-68 262.7 380 46.1
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 9.4e-68 262.7 380 46.1
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 1.3e-64 252.3 816 29.0
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 6.3e-64 250.0 581 34.8
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 2.4e-63 248.1 1092 26.8
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 4.1e-63 247.3 1005 28.8
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 5.3e-63 246.9 380 42.4
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 5.3e-63 246.9 1141 26.3
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 1.6e-62 245.4 816 30.1
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 2.0e-62 245.0 591 35.7
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 4.5e-62 243.8 338 46.2
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 7.7e-62 243.0 380 41.6
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.2e-61 241.5 172 75.0
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 1.1e-60 239.2 834 29.0
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 7.2e-60 236.5 1073 27.3
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.4e-58 232.3 581 35.6
Peaxi162Scf00207g01618 Petunia axillaris HOM05D004393 ORTHO05D004897 1.7e-56 225.3 254 53.1
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 8.3e-56 223.0 377 38.7
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 7.0e-55 219.9 1122 25.5
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 2.5e-52 211.5 294 43.2
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 3.6e-51 207.6 777 29.3
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 6.1e-51 206.8 506 33.0
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 6.8e-50 203.4 338 41.1
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 2.4e-47 194.9 319 40.4
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 3.1e-47 194.5 236 47.0
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.7e-46 191.4 158 63.9
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 7.2e-44 183.3 234 46.6
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-43 182.6 234 45.7
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 1.2e-43 182.6 234 45.7
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 4.4e-41 174.1 210 48.1
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 6.4e-40 170.2 773 26.3
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 6.4e-40 170.2 548 27.6
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 4.3e-36 157.5 217 41.9
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 7.5e-33 146.7 358 32.1
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.7e-32 144.4 210 43.8
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 1.4e-31 142.5 232 42.7
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 5.4e-31 140.6 195 43.6
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.5e-30 137.9 197 40.6
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 4.6e-30 137.5 197 40.6
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.3e-29 136.0 310 33.5
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 1.2e-27 129.4 197 42.1
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 6.8e-26 123.6 166 45.2
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 8.9e-26 123.2 153 44.4
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 3.9e-21 107.8 116 51.7
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 1.1e-20 106.3 159 40.9
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.9e-20 105.5 157 47.1
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 6.2e-19 100.5 138 41.3
BcaB04g17879 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-14 86.3 91 51.6
Lj7A297T45 Lonicera japonica HOM05D004393 ORTHO05D004897 3.6e-11 74.7 145 38.6
Lalb_Chr24g0401081 Lupinus albus HOM05D004393 ORTHO05D004897 1.1e-10 73.2 80 51.2
PGR044G2736 Punica granatum HOM05D000582 ORTHO05D000456 1.5e-09 69.3 107 40.2
arahy.Tifrunner.gnm1.ann1.9CDI8S Arachis hypogaea HOM05D004393 ORTHO05D004897 1.3e-08 66.2 74 47.3
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.3e-08 66.2 98 42.9
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 4.9e-08 64.3 97 41.2


User provided reference genes

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