Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 7.0e-292 1006.5 496 100.0
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 3.5e-206 721.8 450 83.8
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.2e-205 719.2 426 87.3
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.2e-205 719.2 426 87.3
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 1.3e-197 693.3 410 87.3
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 3.6e-187 658.7 493 72.2
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 1.0e-186 657.1 413 81.8
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.8e-186 656.4 426 79.6
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.8e-186 654.4 419 80.9
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 2.0e-185 652.9 426 78.9
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.3e-184 650.2 407 82.1
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.7e-184 649.8 435 77.7
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 2.2e-184 649.4 419 80.2
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 6.3e-184 647.9 419 79.7
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.8e-183 646.4 419 79.5
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.8e-183 646.4 447 76.3
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 4.1e-183 645.2 426 78.4
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.6e-182 643.3 417 80.3
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.6e-182 643.3 402 82.3
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.7e-182 642.5 419 80.0
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 2.7e-182 642.5 414 80.0
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 2.7e-182 642.5 414 80.0
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 3.5e-182 642.1 419 80.0
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.5e-182 642.1 414 79.7
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 4.5e-182 641.7 422 77.7
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 5.9e-182 641.3 417 79.9
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 7.7e-182 641.0 435 77.2
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 1.7e-181 639.8 414 80.0
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 2.9e-181 639.0 404 80.0
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 3.8e-181 638.6 419 78.5
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 5.0e-181 638.3 409 80.0
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 8.6e-181 637.5 414 80.0
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.1e-180 637.1 426 78.4
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 1.9e-180 636.3 409 80.9
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.9e-180 636.3 414 78.5
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 2.5e-180 636.0 420 78.8
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 2.5e-180 636.0 419 79.0
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 3.3e-180 635.6 420 78.3
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 3.3e-180 635.6 421 78.1
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 7.3e-180 634.4 419 77.6
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 9.5e-180 634.0 420 78.6
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.6e-179 633.3 408 77.9
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 1.6e-179 633.3 422 77.7
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 2.1e-179 632.9 426 76.8
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.6e-179 632.1 420 78.1
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 6.1e-179 631.3 437 74.4
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.0e-178 630.6 405 79.5
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 1.8e-178 629.8 409 80.7
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 3.0e-178 629.0 423 77.5
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 3.0e-178 629.0 452 73.9
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 5.2e-178 628.2 420 77.1
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 2.0e-177 626.3 416 76.9
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 5.7e-177 624.8 419 77.1
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 7.5e-177 624.4 476 70.4
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.3e-176 623.6 436 73.9
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.7e-176 623.2 436 74.3
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 4.9e-176 621.7 426 75.4
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 6.4e-176 621.3 426 75.1
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 8.3e-176 620.9 414 77.3
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.1e-175 620.5 419 74.9
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.8e-175 619.8 402 78.4
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 1.8e-175 619.8 421 75.3
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 2.4e-175 619.4 402 78.1
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 2.4e-175 619.4 426 75.4
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 4.1e-175 618.6 426 75.1
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 7.0e-175 617.8 426 74.9
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.6e-174 616.7 424 74.8
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 3.5e-174 615.5 424 74.5
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 3.5e-174 615.5 424 74.5
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 3.5e-174 615.5 424 74.5
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 4.6e-174 615.1 429 73.7
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 5.9e-174 614.8 427 74.0
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 7.8e-174 614.4 425 75.3
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 1.0e-173 614.0 384 81.2
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.0e-173 614.0 437 74.1
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-173 613.6 402 77.4
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 5.0e-173 611.7 421 75.1
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 8.6e-173 610.9 425 75.1
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.1e-172 610.5 414 76.6
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 7.3e-172 607.8 421 74.6
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.2e-171 607.1 428 74.8
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.4e-170 603.6 421 74.6
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 2.2e-168 596.3 399 76.7
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 8.3e-168 594.3 404 75.0
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.9e-167 593.2 441 71.4
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 7.0e-167 591.3 423 73.3
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 1.6e-166 590.1 421 72.4
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 1.6e-166 590.1 423 73.8
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 5.0e-165 585.1 409 75.3
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.1e-164 583.9 409 75.6
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 2.5e-164 582.8 382 79.8
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 3.3e-164 582.4 425 71.3
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 4.3e-164 582.0 352 83.5
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 5.6e-164 581.6 424 71.2
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 7.3e-164 581.3 419 71.8
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.1e-163 579.7 425 71.5
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.1e-163 579.7 425 71.5
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.1e-162 577.4 385 76.9
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.0e-162 575.5 437 70.3
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 4.9e-160 568.5 304 93.1
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.1e-159 567.4 376 79.0
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 7.1e-159 564.7 418 68.9
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.7e-158 562.8 416 70.7
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.6e-155 553.5 413 71.2
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 3.6e-155 552.4 428 66.4
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 4.7e-155 552.0 379 77.0
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 6.8e-154 548.1 409 70.2
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 8.9e-154 547.7 422 68.5
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.2e-153 547.4 416 70.7
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 3.8e-152 542.3 376 75.0
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.4e-146 523.9 366 76.2
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 3.1e-146 522.7 376 73.7
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.4e-143 513.1 416 66.8
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 1.3e-136 490.7 355 72.4
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 2.9e-136 489.6 415 61.7
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 1.6e-134 483.8 285 84.2
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 2.7e-134 483.0 288 84.4
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 1.3e-131 474.2 340 70.9
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 5.5e-127 458.8 362 68.8
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 4.3e-124 449.1 236 94.1
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 2.3e-117 426.8 308 75.0
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 3.1e-114 416.4 230 87.4
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.5e-113 414.1 252 81.7
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 4.3e-108 396.0 412 52.7
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 2.8e-107 393.3 350 64.6
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 4.5e-105 386.0 227 81.9
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 4.2e-103 379.4 249 79.1
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 2.7e-102 376.7 288 71.9
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 3.1e-98 363.2 413 49.9
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 5.9e-97 359.0 376 50.8
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.2e-94 351.3 407 48.4
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 1.2e-94 351.3 288 67.0
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 5.2e-93 345.9 225 79.6
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 6.7e-93 345.5 196 85.7
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-84 318.2 183 81.4
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 3.3e-84 316.6 283 62.9
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 7.5e-84 315.5 444 42.1
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 4.5e-81 306.2 213 73.7
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 2.7e-78 297.0 239 66.5
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.7e-64 251.1 275 54.9
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 5.2e-61 239.6 140 81.4
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.4e-58 231.5 188 69.1
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 1.1e-53 215.3 202 59.9
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 1.6e-46 191.4 208 52.4
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 7.5e-44 182.6 204 54.9
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 9.5e-39 165.6 147 61.9
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 4.3e-31 140.2 96 76.0
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 3.2e-26 124.0 155 51.6
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 2.4e-21 107.8 57 87.7
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.5e-20 105.1 142 47.2
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 7.6e-20 102.8 70 68.6
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.3e-19 102.1 140 47.1
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 2.2e-19 101.3 101 55.4
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 8.4e-19 99.4 71 71.8
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 2.4e-18 97.8 97 54.6
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 9.6e-15 85.9 97 52.6
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.1e-14 84.7 76 61.8
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 1.1e-13 82.4 94 51.1
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.8e-13 81.6 42 85.7
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 1.6e-09 68.6 322 26.7
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 1.9e-07 61.6 318 24.8
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 9.6e-07 59.3 47 61.7


User provided reference genes

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