Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 8.2e-191 670.2 339 100.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.1e-78 297.7 173 93.6
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.3e-71 274.2 176 85.2
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.7e-71 273.9 173 85.0
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 3.0e-68 263.1 173 82.1
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 8.8e-44 181.8 180 62.2
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.8e-42 176.8 157 68.2
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 8.2e-42 175.3 175 60.0
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.6e-40 170.2 125 76.0
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.2e-39 167.2 158 64.6
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 3.0e-36 156.8 205 52.7
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 3.5e-32 143.3 162 54.9
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 8.5e-31 138.7 171 53.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 8.5e-31 138.7 144 54.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 4.2e-30 136.3 171 51.5
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 4.2e-30 136.3 171 51.5
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 4.2e-30 136.3 178 52.8
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.6e-29 134.4 174 51.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.7e-29 132.9 171 53.8
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 4.7e-29 132.9 138 58.7
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 5.2e-28 129.4 183 50.3
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 2.0e-27 127.5 198 42.9
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.5e-27 125.6 171 50.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 3.7e-26 123.2 200 47.5
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 6.3e-26 122.5 149 51.7
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 7.0e-25 119.0 171 48.5
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 7.0e-25 119.0 178 49.4
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.2e-24 118.2 171 51.5
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.6e-24 117.9 172 50.6
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 2.7e-24 117.1 200 45.5
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-24 116.7 199 46.2
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 4.5e-24 116.3 176 48.3
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.0e-23 115.2 200 46.0
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.7e-23 114.4 183 48.1
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 2.3e-23 114.0 172 50.6
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.8e-23 113.2 141 54.6
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.2e-22 109.8 202 45.0
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 4.2e-22 109.8 159 49.7
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 5.5e-22 109.4 159 47.8
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.2e-22 109.0 201 43.8
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.2e-21 108.2 161 47.2
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.1e-21 107.5 158 50.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.1e-21 107.5 176 48.9
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.8e-21 107.1 129 54.3
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 6.1e-21 105.9 154 51.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.4e-20 104.8 194 43.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.4e-20 104.8 194 42.8
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-20 104.4 202 44.6
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.0e-20 103.6 195 40.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.0e-20 103.2 156 44.9
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.9e-20 102.1 163 42.9
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.2e-19 101.7 192 43.8
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.6e-19 100.5 214 39.3
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 3.4e-19 100.1 152 48.7
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 7.5e-19 99.0 154 49.4
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.7e-18 97.8 152 43.4
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.7e-18 97.8 169 50.9
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.2e-18 97.4 156 43.6
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 6.3e-18 95.9 184 41.3
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-17 95.1 205 41.5
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.8e-17 94.4 155 42.6
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.4e-17 94.0 169 43.8
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 3.2e-17 93.6 154 49.4
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 5.4e-17 92.8 123 51.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 7.0e-17 92.4 168 45.8
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 7.0e-17 92.4 159 47.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 9.2e-17 92.0 120 55.8
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 2.0e-16 90.9 156 44.2
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.0e-16 90.9 172 43.6
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-16 90.5 205 40.5
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.5e-16 90.1 172 42.4
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.9e-16 89.4 155 44.5
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.9e-16 89.4 174 41.4
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.0e-15 88.6 165 44.2
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.0e-15 88.6 124 46.8
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.0e-15 88.6 75 66.7
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.7e-15 87.8 126 52.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.9e-15 87.0 193 41.5
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 5.0e-15 86.3 154 46.8
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 6.6e-15 85.9 156 43.6
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 8.6e-15 85.5 93 51.6
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.5e-14 84.0 190 38.9
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.5e-14 84.0 256 33.6
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 4.3e-14 83.2 176 42.0
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.3e-14 83.2 157 45.2
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 7.3e-14 82.4 128 44.5
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.6e-13 81.3 125 44.8
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 2.8e-13 80.5 124 46.8
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.8e-13 80.5 215 33.5
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 8.0e-13 79.0 207 35.3
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.4e-12 78.2 141 41.1
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.4e-12 78.2 230 32.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.4e-12 78.2 172 34.3
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.4e-12 78.2 169 38.5
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.3e-12 77.4 214 33.6
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 3.1e-12 77.0 169 40.2
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 4.0e-12 76.6 108 47.2
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 6.8e-12 75.9 161 38.5
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 8.9e-12 75.5 168 35.7
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.2e-11 75.1 199 31.2
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.2e-11 75.1 124 47.6
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.2e-11 75.1 206 36.4
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-11 74.7 153 38.6
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-11 74.7 173 34.1
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-11 74.7 153 38.6
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-11 74.7 176 42.0
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-11 74.7 176 42.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.0e-11 74.3 153 38.6
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.0e-11 74.3 102 52.0
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.0e-11 74.3 102 52.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.4e-11 73.2 179 43.0
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.4e-11 73.2 179 43.0
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.4e-11 73.2 179 43.0
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 5.8e-11 72.8 206 34.0
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 9.8e-11 72.0 118 39.8
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.3e-10 71.6 153 37.9
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-10 71.2 147 38.8
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.7e-10 71.2 215 31.2
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.7e-10 71.2 144 38.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 2.2e-10 70.9 211 31.3
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.2e-10 70.9 223 33.2
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 2.9e-10 70.5 206 34.0
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.9e-10 70.5 180 43.3
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 6.4e-10 69.3 184 33.2
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 6.4e-10 69.3 169 34.9
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 8.3e-10 68.9 295 28.8
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-09 68.6 213 32.4
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-09 68.6 167 34.1
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.1e-09 68.6 294 28.9
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.4e-09 67.4 187 33.7
SalBow3G3444 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.4e-09 67.4 68 57.4
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 3.2e-09 67.0 141 38.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 5.4e-09 66.2 161 36.0
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 7.0e-09 65.9 98 49.0
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.2e-08 65.1 59 64.4
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.7e-08 63.9 229 30.1
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.6e-08 63.2 105 46.7
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 6.0e-08 62.8 133 40.6
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 8.6e-07 58.9 152 37.5
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.3e-06 57.0 121 37.2
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 5.6e-06 56.2 137 35.8
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 5.6e-06 56.2 61 57.4
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 7.3e-06 55.8 155 34.8


User provided reference genes

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